Gene annotation
Transcriptome id Sobic.005G134100.1
Synonym Sb05g019800
Functional annotation rubredoxin family protein, putative, expressed
UniProt C5Y3C5
Pfam -
Panther DB PTHR17130 PTHR17130:SF25
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G51010 : Rubredoxin-like superfamily protein
RAP-DB (Rice) LOC_Os11g32500.1 : rubredoxin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a015689
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.005G134100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G028300 expressed protein -
2 Sobic.008G088821 - K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
3 Sobic.006G108200 expressed protein -
4 Sobic.006G140500 photosystem-II repair protein, putative, expressed -
5 Sobic.001G015200 Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed -
6 Sobic.001G167900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
7 Sobic.005G062700 nifU, putative, expressed -
8 Sobic.002G047400 "protein containing PDZ domain, a K-box domain, and a TPR region"(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SHOOT1 protein, putative, expressed -
9 Sobic.004G317700 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
10 Sobic.006G063900 NAD dependent epimerase/dehydratase family protein, putative, expressed -
11 Sobic.009G225600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
12 Sobic.003G419900 photosystem II reaction center PSB28 protein, chloroplast precursor, putative, expressed K08903: photosystem II 13kDa protein
13 Sobic.003G269300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
14 Sobic.006G221000 starch synthase 3(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@soluble starch synthase 3, chloroplast precursor, putative, expressed -
15 Sobic.003G186800 transporter, major facilitator family, putative, expressed -
16 Sobic.003G005000 expressed protein -
17 Sobic.001G220000 PPR repeat containing protein, expressed -
18 Sobic.009G132000 expressed protein -
19 Sobic.009G123300 NAD dependent epimerase/dehydratase family protein, putative, expressed K06118: SQD1, UDP-sulfoquinovose synthase
20 Sobic.006G235350 - -


Gene co-expression network
sample Sobic005G134100 Sobic005G134100 Sobic004G028300 Sobic004G028300 Sobic005G134100--Sobic004G028300 Sobic008G088821 Sobic008G088821 Sobic005G134100--Sobic008G088821 Sobic006G108200 Sobic006G108200 Sobic005G134100--Sobic006G108200 Sobic006G140500 Sobic006G140500 Sobic005G134100--Sobic006G140500 Sobic001G015200 Sobic001G015200 Sobic005G134100--Sobic001G015200 Sobic001G167900 Sobic001G167900 Sobic005G134100--Sobic001G167900 Sobic005G062700 Sobic005G062700 Sobic005G134100--Sobic005G062700 Sobic002G047400 Sobic002G047400 Sobic005G134100--Sobic002G047400 Sobic004G317700 Sobic004G317700 Sobic005G134100--Sobic004G317700 Sobic004G028300--Sobic008G088821 Sobic004G028300--Sobic001G167900 Sobic004G028300--Sobic006G140500 Sobic006G063900 Sobic006G063900 Sobic004G028300--Sobic006G063900 Sobic004G028300--Sobic001G015200 Sobic004G028300--Sobic005G134100 Sobic003G419900 Sobic003G419900 Sobic004G028300--Sobic003G419900 Sobic004G359600 Sobic004G359600 Sobic004G028300--Sobic004G359600 Sobic004G028300--Sobic006G108200 Sobic008G088821--Sobic001G015200 Sobic008G088821--Sobic006G140500 Sobic008G088821--Sobic004G028300 Sobic009G119300 Sobic009G119300 Sobic008G088821--Sobic009G119300 Sobic003G103300 Sobic003G103300 Sobic008G088821--Sobic003G103300 Sobic001G018000 Sobic001G018000 Sobic008G088821--Sobic001G018000 Sobic004G268400 Sobic004G268400 Sobic008G088821--Sobic004G268400 Sobic010G101000 Sobic010G101000 Sobic008G088821--Sobic010G101000 Sobic002G030900 Sobic002G030900 Sobic008G088821--Sobic002G030900 Sobic003G275200 Sobic003G275200 Sobic006G108200--Sobic003G275200 Sobic002G351600 Sobic002G351600 Sobic006G108200--Sobic002G351600 Sobic004G055000 Sobic004G055000 Sobic006G108200--Sobic004G055000 Sobic006G108200--Sobic004G028300 Sobic004G154800 Sobic004G154800 Sobic006G108200--Sobic004G154800 Sobic002G200900 Sobic002G200900 Sobic006G108200--Sobic002G200900 Sobic001G220000 Sobic001G220000 Sobic006G108200--Sobic001G220000 Sobic006G108200--Sobic001G167900 Sobic006G108200--Sobic005G134100 Sobic006G140500--Sobic008G088821 Sobic006G235350 Sobic006G235350 Sobic006G140500--Sobic006G235350 Sobic006G140500--Sobic001G015200 Sobic001G029600 Sobic001G029600 Sobic006G140500--Sobic001G029600 Sobic006G140500--Sobic009G119300 Sobic006G140500--Sobic004G028300 Sobic004G202200 Sobic004G202200 Sobic006G140500--Sobic004G202200 Sobic005G028800 Sobic005G028800 Sobic006G140500--Sobic005G028800 Sobic007G166300 Sobic007G166300 Sobic006G140500--Sobic007G166300 Sobic001G015200--Sobic008G088821 Sobic001G015200--Sobic007G166300 Sobic001G015200--Sobic003G103300 Sobic001G015200--Sobic006G140500 Sobic001G015200--Sobic002G047400 Sobic001G509200 Sobic001G509200 Sobic001G015200--Sobic001G509200 Sobic001G393300 Sobic001G393300 Sobic001G015200--Sobic001G393300 Sobic001G015200--Sobic009G119300 Sobic001G015200--Sobic010G101000 Sobic001G167900--Sobic004G028300 Sobic004G124400 Sobic004G124400 Sobic001G167900--Sobic004G124400 Sobic001G167900--Sobic004G359600 Sobic001G167900--Sobic006G063900 Sobic001G167900--Sobic001G015200 Sobic001G167900--Sobic008G088821 Sobic001G167900--Sobic002G351600 Sobic001G167900--Sobic007G166300 Sobic007G130400 Sobic007G130400 Sobic001G167900--Sobic007G130400 Sobic009G225600 Sobic009G225600 Sobic005G062700--Sobic009G225600 Sobic005G062700--Sobic001G015200 Sobic005G062700--Sobic002G047400 Sobic001G303200 Sobic001G303200 Sobic005G062700--Sobic001G303200 Sobic006G221000 Sobic006G221000 Sobic005G062700--Sobic006G221000 Sobic005G062700--Sobic001G509200 Sobic005G172400 Sobic005G172400 Sobic005G062700--Sobic005G172400 Sobic007G108900 Sobic007G108900 Sobic005G062700--Sobic007G108900 Sobic004G305900 Sobic004G305900 Sobic005G062700--Sobic004G305900 Sobic002G047400--Sobic009G225600 Sobic008G149100 Sobic008G149100 Sobic002G047400--Sobic008G149100 Sobic003G186800 Sobic003G186800 Sobic002G047400--Sobic003G186800 Sobic001G046000 Sobic001G046000 Sobic002G047400--Sobic001G046000 Sobic003G228300 Sobic003G228300 Sobic002G047400--Sobic003G228300 Sobic002G047400--Sobic001G015200 Sobic002G047400--Sobic010G101000 Sobic002G047400--Sobic001G509200 Sobic001G485100 Sobic001G485100 Sobic002G047400--Sobic001G485100 Sobic002G081400 Sobic002G081400 Sobic004G317700--Sobic002G081400 Sobic002G356900 Sobic002G356900 Sobic004G317700--Sobic002G356900 Sobic004G300100 Sobic004G300100 Sobic004G317700--Sobic004G300100 Sobic007G087100 Sobic007G087100 Sobic004G317700--Sobic007G087100 Sobic009G073900 Sobic009G073900 Sobic004G317700--Sobic009G073900 Sobic003G003450 Sobic003G003450 Sobic004G317700--Sobic003G003450 Sobic002G060800 Sobic002G060800 Sobic004G317700--Sobic002G060800 Sobic002G072400 Sobic002G072400 Sobic004G317700--Sobic002G072400 Sobic007G124500 Sobic007G124500 Sobic004G317700--Sobic007G124500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.