Gene annotation
Transcriptome id Sobic.005G061900.2,Sobic.005G061900.1
Synonym
Functional annotation -
UniProt C5Y655 , A0A1B6PQF5
Pfam PF04851 PF00271
Panther DB PTHR14025 PTHR14025:SF20
NCBI CDD -
KEGG Orthology K10896; fanconi anemia group M protein
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G35530 : DEAD/DEAH box RNA helicase family protein
RAP-DB (Rice) LOC_Os11g07870.1 : DEAD/DEAH box helicase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a034017
Brachypodium PNT64059 , PNT64058 , PNT64060
Barley -
Wheat TraesCS4D02G092800 , TraesCS4B02G096400 , TraesCS4A02G217700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G340000 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1
2 Sobic.004G213800 expressed protein -
3 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1
4 Sobic.010G273300 Leucine Rich Repeat family protein, expressed -
5 Sobic.001G450000 nucleoporin, putative, expressed K14300: nuclear pore complex protein Nup133
6 Sobic.003G388000 tetratricopeptide repeat domain containing protein, expressed K03350: APC3, anaphase-promoting complex subunit 3
7 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
8 Sobic.010G205600 Leucine Rich Repeat family protein, expressed -
9 Sobic.003G163200 expressed protein K11654: SMARCA5, SNF2H, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
10 Sobic.006G029100 actin, putative, expressed K11673: ACTR8, ARP8, actin-related protein 8
11 Sobic.007G155500 pentatricopeptide containing protein, putative, expressed -
12 Sobic.010G244900 auxin efflux carrier, putative, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
13 Sobic.001G373800 MIF4G domain containing protein, putative, expressed K12882: NCBP1, nuclear cap-binding protein subunit 1
14 Sobic.002G308700 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
15 Sobic.010G000800 PHD-finger domain containing protein, expressed -
16 Sobic.001G030000 FG-GAP repeat-containing protein, putative, expressed -
17 Sobic.005G188300 expressed protein -
18 Sobic.003G256800 RNA polymerase III subunit RPC82 family protein, putative, expressed K03023: RPC3, DNA-directed RNA polymerase III subunit RPC3
19 Sobic.008G152000 biotin--protein ligase, putative, expressed K03801: lipoyl(octanoyl) transferase
20 Sobic.003G241700 SET domain containing protein, expressed -


Gene co-expression network
sample Sobic005G061900 Sobic005G061900 Sobic001G340000 Sobic001G340000 Sobic005G061900--Sobic001G340000 Sobic004G213800 Sobic004G213800 Sobic005G061900--Sobic004G213800 Sobic004G053500 Sobic004G053500 Sobic005G061900--Sobic004G053500 Sobic010G273300 Sobic010G273300 Sobic005G061900--Sobic010G273300 Sobic001G450000 Sobic001G450000 Sobic005G061900--Sobic001G450000 Sobic003G388000 Sobic003G388000 Sobic005G061900--Sobic003G388000 Sobic002G371600 Sobic002G371600 Sobic005G061900--Sobic002G371600 Sobic010G205600 Sobic010G205600 Sobic005G061900--Sobic010G205600 Sobic003G163200 Sobic003G163200 Sobic005G061900--Sobic003G163200 Sobic001G340000--Sobic005G061900 Sobic003G043000 Sobic003G043000 Sobic001G340000--Sobic003G043000 Sobic002G363800 Sobic002G363800 Sobic001G340000--Sobic002G363800 Sobic003G256800 Sobic003G256800 Sobic001G340000--Sobic003G256800 Sobic004G265500 Sobic004G265500 Sobic001G340000--Sobic004G265500 Sobic001G030000 Sobic001G030000 Sobic001G340000--Sobic001G030000 Sobic001G340000--Sobic003G163200 Sobic006G026250 Sobic006G026250 Sobic001G340000--Sobic006G026250 Sobic001G340000--Sobic010G273300 Sobic003G241700 Sobic003G241700 Sobic004G213800--Sobic003G241700 Sobic001G151100 Sobic001G151100 Sobic004G213800--Sobic001G151100 Sobic010G244900 Sobic010G244900 Sobic004G213800--Sobic010G244900 Sobic009G228000 Sobic009G228000 Sobic004G213800--Sobic009G228000 Sobic003G296900 Sobic003G296900 Sobic004G213800--Sobic003G296900 Sobic004G213800--Sobic003G043000 Sobic005G167700 Sobic005G167700 Sobic004G213800--Sobic005G167700 Sobic001G275300 Sobic001G275300 Sobic004G213800--Sobic001G275300 Sobic007G000300 Sobic007G000300 Sobic004G213800--Sobic007G000300 Sobic002G401500 Sobic002G401500 Sobic004G053500--Sobic002G401500 Sobic002G179400 Sobic002G179400 Sobic004G053500--Sobic002G179400 Sobic002G335600 Sobic002G335600 Sobic004G053500--Sobic002G335600 Sobic006G166200 Sobic006G166200 Sobic004G053500--Sobic006G166200 Sobic006G032300 Sobic006G032300 Sobic004G053500--Sobic006G032300 Sobic005G133800 Sobic005G133800 Sobic004G053500--Sobic005G133800 Sobic002G340900 Sobic002G340900 Sobic004G053500--Sobic002G340900 Sobic004G053500--Sobic003G296900 Sobic005G162500 Sobic005G162500 Sobic004G053500--Sobic005G162500 Sobic008G044900 Sobic008G044900 Sobic010G273300--Sobic008G044900 Sobic008G021400 Sobic008G021400 Sobic010G273300--Sobic008G021400 Sobic010G273300--Sobic010G205600 Sobic001G475100 Sobic001G475100 Sobic010G273300--Sobic001G475100 Sobic007G188800 Sobic007G188800 Sobic010G273300--Sobic007G188800 Sobic010G273300--Sobic001G340000 Sobic010G121100 Sobic010G121100 Sobic010G273300--Sobic010G121100 Sobic010G273300--Sobic005G061900 Sobic005G188300 Sobic005G188300 Sobic010G273300--Sobic005G188300 Sobic003G375200 Sobic003G375200 Sobic001G450000--Sobic003G375200 Sobic002G318800 Sobic002G318800 Sobic001G450000--Sobic002G318800 Sobic007G097400 Sobic007G097400 Sobic001G450000--Sobic007G097400 Sobic001G020000 Sobic001G020000 Sobic001G450000--Sobic001G020000 Sobic002G412700 Sobic002G412700 Sobic001G450000--Sobic002G412700 Sobic006G029100 Sobic006G029100 Sobic001G450000--Sobic006G029100 Sobic010G080700 Sobic010G080700 Sobic001G450000--Sobic010G080700 Sobic001G451300 Sobic001G451300 Sobic001G450000--Sobic001G451300 Sobic006G047900 Sobic006G047900 Sobic001G450000--Sobic006G047900 Sobic003G388000--Sobic002G371600 Sobic004G322300 Sobic004G322300 Sobic003G388000--Sobic004G322300 Sobic002G160700 Sobic002G160700 Sobic003G388000--Sobic002G160700 Sobic004G030400 Sobic004G030400 Sobic003G388000--Sobic004G030400 Sobic004G177600 Sobic004G177600 Sobic003G388000--Sobic004G177600 Sobic003G396700 Sobic003G396700 Sobic003G388000--Sobic003G396700 Sobic010G188000 Sobic010G188000 Sobic003G388000--Sobic010G188000 Sobic003G388000--Sobic001G340000 Sobic001G475000 Sobic001G475000 Sobic003G388000--Sobic001G475000 Sobic001G373800 Sobic001G373800 Sobic002G371600--Sobic001G373800 Sobic002G371600--Sobic006G029100 Sobic006G245900 Sobic006G245900 Sobic002G371600--Sobic006G245900 Sobic004G356200 Sobic004G356200 Sobic002G371600--Sobic004G356200 Sobic003G308500 Sobic003G308500 Sobic002G371600--Sobic003G308500 Sobic002G371600--Sobic002G160700 Sobic003G052800 Sobic003G052800 Sobic002G371600--Sobic003G052800 Sobic002G371600--Sobic001G451300 Sobic010G262100 Sobic010G262100 Sobic002G371600--Sobic010G262100 Sobic010G205600--Sobic010G273300 Sobic010G089800 Sobic010G089800 Sobic010G205600--Sobic010G089800 Sobic002G308700 Sobic002G308700 Sobic010G205600--Sobic002G308700 Sobic010G205600--Sobic005G162500 Sobic004G248600 Sobic004G248600 Sobic010G205600--Sobic004G248600 Sobic001G192000 Sobic001G192000 Sobic010G205600--Sobic001G192000 Sobic009G255700 Sobic009G255700 Sobic010G205600--Sobic009G255700 Sobic003G186000 Sobic003G186000 Sobic010G205600--Sobic003G186000 Sobic010G169600 Sobic010G169600 Sobic010G205600--Sobic010G169600 Sobic003G163200--Sobic004G265500 Sobic002G042600 Sobic002G042600 Sobic003G163200--Sobic002G042600 Sobic010G000800 Sobic010G000800 Sobic003G163200--Sobic010G000800 Sobic003G163200--Sobic003G043000 Sobic003G163200--Sobic002G179400 Sobic010G223100 Sobic010G223100 Sobic003G163200--Sobic010G223100 Sobic002G429300 Sobic002G429300 Sobic003G163200--Sobic002G429300 Sobic006G184900 Sobic006G184900 Sobic003G163200--Sobic006G184900 Sobic004G204100 Sobic004G204100 Sobic003G163200--Sobic004G204100
Octagon: transcription factors


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