Gene annotation
Transcriptome id Sobic.001G186100.1
Synonym ATRBP45A, Sb01g016170, RBP45A
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1Z5S6A0
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF434
NCBI CDD KOG0148; Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G54900 : RNA-binding protein 45A
RAP-DB (Rice) LOC_Os03g37270.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a057075 , Zm00025a017381
Brachypodium -
Barley HORVU7Hr1G066510.3 , HORVU7Hr1G066510.2 , HORVU7Hr1G066510.5 , HORVU7Hr1G066510.8 , HORVU7Hr1G066510.7 , HORVU7Hr1G066510.6 , HORVU7Hr1G066510.4 , HORVU7Hr1G066510.9 , HORVU7Hr1G066510.13 , HORVU7Hr1G066510.12 , HORVU7Hr1G066510.11 , HORVU7Hr1G066510.10 , HORVU7Hr1G066510.14
Wheat TraesCS6B02G128900 , TraesCS6B02G128900 , TraesCS6D02G081700 , TraesCS6D02G081700 , TraesCS6D02G081700 , TraesCS7A02G295700 , TraesCS7A02G295700 , TraesCS7A02G295700 , TraesCS6A02G100800
Populus -


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cDNA sequences
Sobic.001G186100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G251100 - K03257: translation initiation factor 4A
2 Sobic.001G216200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
3 Sobic.001G007200 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
4 Sobic.001G402300 RNA recognition motif containing protein, putative, expressed K11094: U2 small nuclear ribonucleoprotein B''
5 Sobic.001G031200 Methyltransferase small domain containing protein, expressed K02493: hemK, prmC, release factor glutamine methyltransferase
6 Sobic.004G086600 26S protease regulatory subunit, putative, expressed K03066: PSMC5, 26S proteasome regulatory subunit T6
7 Sobic.001G467300 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
8 Sobic.001G073000 expressed protein K09659: dolichol-phosphate mannosyltransferase subunit 3
9 Sobic.008G004000 ribosomal protein L10, putative, expressed K14815: mRNA turnover protein 4
10 Sobic.003G344900 selT-like protein precursor, putative, expressed -
11 Sobic.009G228800 dolichol phosphate-mannose biosynthesis regulatory protein, putative, expressed K09658: dolichol phosphate-mannose biosynthesis regulatory protein
12 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
13 Sobic.001G226100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
14 Sobic.007G203700 SNF1-related protein kinase regulatory subunit beta-2, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
15 Sobic.001G415500 zinc finger, C3HC4 type domain containing protein, expressed K13125: nitric oxide synthase-interacting protein
16 Sobic.006G254700 PHF5-like protein domain containing protein, expressed K12834: PHD finger-like domain-containing protein 5A
17 Sobic.003G261500 lipase, putative, expressed -
18 Sobic.001G054200 green ripe-like, putative, expressed -
19 Sobic.002G301400 expressed protein -
20 Sobic.010G146600 cyclin-dependent kinase F-1, putative, expressed -


Gene co-expression network
sample Sobic001G186100 Sobic001G186100 Sobic010G251100 Sobic010G251100 Sobic001G186100--Sobic010G251100 Sobic001G216200 Sobic001G216200 Sobic001G186100--Sobic001G216200 Sobic001G007200 Sobic001G007200 Sobic001G186100--Sobic001G007200 Sobic001G402300 Sobic001G402300 Sobic001G186100--Sobic001G402300 Sobic001G031200 Sobic001G031200 Sobic001G186100--Sobic001G031200 Sobic004G086600 Sobic004G086600 Sobic001G186100--Sobic004G086600 Sobic001G467300 Sobic001G467300 Sobic001G186100--Sobic001G467300 Sobic001G073000 Sobic001G073000 Sobic001G186100--Sobic001G073000 Sobic008G004000 Sobic008G004000 Sobic001G186100--Sobic008G004000 Sobic001G226100 Sobic001G226100 Sobic010G251100--Sobic001G226100 Sobic010G251100--Sobic001G402300 Sobic003G226500 Sobic003G226500 Sobic010G251100--Sobic003G226500 Sobic009G232400 Sobic009G232400 Sobic010G251100--Sobic009G232400 Sobic007G205000 Sobic007G205000 Sobic010G251100--Sobic007G205000 Sobic008G004400 Sobic008G004400 Sobic010G251100--Sobic008G004400 Sobic006G278700 Sobic006G278700 Sobic010G251100--Sobic006G278700 Sobic010G012600 Sobic010G012600 Sobic010G251100--Sobic010G012600 Sobic010G193800 Sobic010G193800 Sobic010G251100--Sobic010G193800 Sobic008G058300 Sobic008G058300 Sobic001G216200--Sobic008G058300 Sobic007G186300 Sobic007G186300 Sobic001G216200--Sobic007G186300 Sobic001G216200--Sobic008G004000 Sobic003G248600 Sobic003G248600 Sobic001G216200--Sobic003G248600 Sobic004G300900 Sobic004G300900 Sobic001G216200--Sobic004G300900 Sobic001G415500 Sobic001G415500 Sobic001G216200--Sobic001G415500 Sobic001G216200--Sobic001G402300 Sobic001G054200 Sobic001G054200 Sobic001G216200--Sobic001G054200 Sobic004G107600 Sobic004G107600 Sobic001G216200--Sobic004G107600 Sobic010G083700 Sobic010G083700 Sobic001G007200--Sobic010G083700 Sobic001G007200--Sobic001G415500 Sobic001G007200--Sobic007G186300 Sobic010G253800 Sobic010G253800 Sobic001G007200--Sobic010G253800 Sobic001G007200--Sobic004G086600 Sobic001G007200--Sobic001G073000 Sobic009G246950 Sobic009G246950 Sobic001G007200--Sobic009G246950 Sobic004G141700 Sobic004G141700 Sobic001G007200--Sobic004G141700 Sobic009G146100 Sobic009G146100 Sobic001G007200--Sobic009G146100 Sobic008G137600 Sobic008G137600 Sobic001G402300--Sobic008G137600 Sobic001G402300--Sobic001G226100 Sobic001G402300--Sobic004G141700 Sobic001G402300--Sobic010G251100 Sobic007G118000 Sobic007G118000 Sobic001G402300--Sobic007G118000 Sobic001G402300--Sobic009G232400 Sobic002G413400 Sobic002G413400 Sobic001G402300--Sobic002G413400 Sobic001G529000 Sobic001G529000 Sobic001G402300--Sobic001G529000 Sobic001G285300 Sobic001G285300 Sobic001G402300--Sobic001G285300 Sobic009G054700 Sobic009G054700 Sobic001G031200--Sobic009G054700 Sobic009G028800 Sobic009G028800 Sobic001G031200--Sobic009G028800 Sobic003G000800 Sobic003G000800 Sobic001G031200--Sobic003G000800 Sobic001G149700 Sobic001G149700 Sobic001G031200--Sobic001G149700 Sobic001G371300 Sobic001G371300 Sobic001G031200--Sobic001G371300 Sobic010G168600 Sobic010G168600 Sobic001G031200--Sobic010G168600 Sobic001G031200--Sobic010G083700 Sobic004G006300 Sobic004G006300 Sobic001G031200--Sobic004G006300 Sobic003G250500 Sobic003G250500 Sobic001G031200--Sobic003G250500 Sobic007G168600 Sobic007G168600 Sobic004G086600--Sobic007G168600 Sobic007G045600 Sobic007G045600 Sobic004G086600--Sobic007G045600 Sobic004G086600--Sobic001G007200 Sobic001G502200 Sobic001G502200 Sobic004G086600--Sobic001G502200 Sobic006G232200 Sobic006G232200 Sobic004G086600--Sobic006G232200 Sobic001G461900 Sobic001G461900 Sobic004G086600--Sobic001G461900 Sobic003G124800 Sobic003G124800 Sobic004G086600--Sobic003G124800 Sobic004G086600--Sobic001G415500 Sobic003G015900 Sobic003G015900 Sobic004G086600--Sobic003G015900 Sobic009G065400 Sobic009G065400 Sobic001G467300--Sobic009G065400 Sobic001G467300--Sobic001G402300 Sobic001G467300--Sobic002G413400 Sobic001G467300--Sobic001G073000 Sobic001G467300--Sobic001G216200 Sobic001G491100 Sobic001G491100 Sobic001G467300--Sobic001G491100 Sobic001G467300--Sobic003G248600 Sobic010G173100 Sobic010G173100 Sobic001G467300--Sobic010G173100 Sobic001G467300--Sobic008G004000 Sobic009G228800 Sobic009G228800 Sobic001G073000--Sobic009G228800 Sobic001G073000--Sobic010G083700 Sobic001G073000--Sobic001G007200 Sobic001G073000--Sobic001G415500 Sobic001G073000--Sobic007G186300 Sobic001G073000--Sobic001G054200 Sobic001G073000--Sobic009G246950 Sobic001G073000--Sobic010G253800 Sobic001G073000--Sobic003G248600 Sobic005G003800 Sobic005G003800 Sobic008G004000--Sobic005G003800 Sobic009G232000 Sobic009G232000 Sobic008G004000--Sobic009G232000 Sobic009G190300 Sobic009G190300 Sobic008G004000--Sobic009G190300 Sobic008G004000--Sobic009G065400 Sobic001G018800 Sobic001G018800 Sobic008G004000--Sobic001G018800 Sobic001G011200 Sobic001G011200 Sobic008G004000--Sobic001G011200 Sobic008G004000--Sobic001G216200 Sobic010G100000 Sobic010G100000 Sobic008G004000--Sobic010G100000 Sobic002G364500 Sobic002G364500 Sobic008G004000--Sobic002G364500
Octagon: transcription factors


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