Gene annotation
Transcriptome id Sobic.004G170500.2,Sobic.004G170500.3
Synonym Sb04g022160
Functional annotation histone H3, putative, expressed
UniProt -
Pfam PF00125
Panther DB PTHR11426
NCBI CDD KOG1745; Histones H3 and H4
KEGG Orthology K11253; histone H3
Gene Ontology GO:0003677; DNA binding GO:0000786nucleosome


Orthologs (automatic annotation)
TAIR AT1G09200 : Histone superfamily protein
RAP-DB (Rice) LOC_Os04g34240.1 : histone H3, putative, expressed
MaizeGDB (Corn) Zm00025a056027 , Zm00025a011450 , Zm00025a039567 , Zm00025a056046 , Zm00025a023384 , Zm00025a011166 , Zm00025a026719 , Zm00025a031558 , Zm00025a041588 , Zm00025a011448 , Zm00025a020776 , Zm00025a049961 , Zm00025a025526 , Zm00025a050169 , Zm00025a041383 , Zm00025a020589
Brachypodium PNT61061 , PNT73249 , KQK06043 , KQK05154 , KQK06659 , KQJ86807 , KQJ82897 , KQJ99805 , KQK19721 , PNT76594
Barley HORVU2Hr1G079550.2 , HORVU2Hr1G079550.1 , HORVU1Hr1G058490.1 , HORVU1Hr1G017800.4 , HORVU1Hr1G017800.3 , HORVU1Hr1G017800.2 , HORVU1Hr1G017800.1 , HORVU1Hr1G058490.3 , HORVU6Hr1G029190.6 , HORVU6Hr1G029190.5 , HORVU6Hr1G029190.4 , HORVU6Hr1G029190.3 , HORVU6Hr1G029190.2 , HORVU6Hr1G029190.1 , HORVU1Hr1G058490.4 , HORVU7Hr1G025160.2 , HORVU7Hr1G025160.1 , HORVU7Hr1G032270.3 , HORVU7Hr1G032270.2 , HORVU7Hr1G032270.1 , HORVU7Hr1G100690.2 , HORVU7Hr1G100690.1 , HORVU7Hr1G032270.4 , HORVU7Hr1G012820.1 , HORVU7Hr1G012820.2 , HORVU7Hr1G012820.3 , HORVU7Hr1G012820.4 , HORVU7Hr1G012820.5 , HORVU7Hr1G012820.6 , HORVU6Hr1G011820.1 , HORVU2Hr1G090210.1 , HORVU2Hr1G090210.2 , HORVU2Hr1G090210.3 , HORVU7Hr1G021840.16 , HORVU7Hr1G021840.14 , HORVU7Hr1G021840.15 , HORVU7Hr1G021840.12 , HORVU7Hr1G021840.13 , HORVU7Hr1G021840.10 , HORVU7Hr1G021840.11 , HORVU7Hr1G025200.2 , HORVU7Hr1G025200.3 , HORVU7Hr1G025200.1 , HORVU6Hr1G031580.1 , HORVU6Hr1G031580.3 , HORVU6Hr1G031580.2 , HORVU1Hr1G020070.2 , HORVU7Hr1G029190.1 , HORVU2Hr1G079560.3 , HORVU2Hr1G079560.2 , HORVU2Hr1G079560.1 , HORVU1Hr1G058490.2 , HORVU2Hr1G079560.6 , HORVU2Hr1G079560.5 , HORVU2Hr1G079560.4 , HORVU7Hr1G024990.4 , HORVU7Hr1G024990.1 , HORVU1Hr1G020070.1 , HORVU7Hr1G024990.3 , HORVU7Hr1G024990.2 , HORVU4Hr1G073150.4 , HORVU4Hr1G073150.2 , HORVU4Hr1G073150.1 , HORVU7Hr1G021840.4 , HORVU7Hr1G021840.5 , HORVU7Hr1G021840.6 , HORVU7Hr1G021840.7 , HORVU7Hr1G021840.1 , HORVU7Hr1G021840.2 , HORVU7Hr1G021840.3 , HORVU7Hr1G021840.8 , HORVU7Hr1G021840.9 , HORVU1Hr1G020070.3 , HORVU6Hr1G007470.1 , HORVU6Hr1G007470.2 , HORVU1Hr1G022400.3 , HORVU1Hr1G022400.2 , HORVU1Hr1G022400.1 , HORVU1Hr1G022400.4 , HORVU1Hr1G074340.1 , HORVU7Hr1G079790.1 , HORVU1Hr1G073670.1 , HORVU3Hr1G063270.1 , HORVU7Hr1G034470.1 , HORVU3Hr1G063270.2 , HORVU6Hr1G011520.1 , HORVU6Hr1G007820.3 , HORVU6Hr1G007820.2 , HORVU6Hr1G007820.1 , HORVU6Hr1G013290.1 , HORVU3Hr1G083350.8 , HORVU7Hr1G025330.1 , HORVU7Hr1G025150.1 , HORVU2Hr1G074240.1 , HORVU2Hr1G074240.3 , HORVU2Hr1G074240.2 , HORVU2Hr1G074240.5 , HORVU2Hr1G074240.4 , HORVU6Hr1G007820.4 , HORVU6Hr1G029200.3 , HORVU6Hr1G029200.2 , HORVU6Hr1G029200.1 , HORVU1Hr1G020050.2 , HORVU1Hr1G020050.3 , HORVU1Hr1G020050.1 , HORVU1Hr1G020050.4 , HORVU7Hr1G033030.1 , HORVU4Hr1G067970.1 , HORVU4Hr1G067970.3 , HORVU4Hr1G067970.2 , HORVU7Hr1G100450.1 , HORVU3Hr1G083350.1 , HORVU3Hr1G083350.2 , HORVU3Hr1G083350.3 , HORVU3Hr1G083350.4 , HORVU3Hr1G083350.5 , HORVU3Hr1G083350.6 , HORVU3Hr1G083350.7 , HORVU1Hr1G080190.1 , HORVU1Hr1G080190.3 , HORVU1Hr1G080190.2 , HORVU7Hr1G046350.1 , HORVU7Hr1G021840.23
Wheat TraesCS7A02G067800 , TraesCS7A02G442900 , TraesCS7D02G061900 , TraesCS6A02G038600 , TraesCS6A02G099700 , TraesCS2D02G316700 , TraesCS7B02G341600 , TraesCS6D02G044300 , TraesCS4A02G423800 , TraesCSU02G092100 , TraesCS6B02G053500 , TraesCS6B02G053300 , TraesCS2B02G337200 , TraesCS6A02G075600 , TraesCS7D02G061500 , TraesCS4B02G275500 , TraesCS1A02G228800 , TraesCS6B02G053200 , TraesCS1A02G421300 , TraesCS3B02G167700 , TraesCS7A02G157100 , TraesCS6A02G038400 , TraesCS7D02G432000 , TraesCS4A02G421900 , TraesCS6A02G038500 , TraesCS4A02G421500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G076400 histone H3, putative, expressed K11253: histone H3
2 Sobic.003G057100 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
3 Sobic.006G134900 ribonucleoside-diphosphate reductase small chain, putative, expressed K10808: ribonucleoside-diphosphate reductase subunit M2
4 Sobic.001G078600 CAMK_CAMK_like_Aur_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
5 Sobic.004G279601 - K11254: histone H4
6 Sobic.003G347900 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
7 Sobic.006G081800 histone H3, putative, expressed K11253: histone H3
8 Sobic.002G136600 expressed protein -
9 Sobic.001G205000 ATEB1A-like microtubule associated protein, putative, expressed K10436: microtubule-associated protein, RP/EB family
10 Sobic.007G154500 F-box protein, putative, expressed -
11 Sobic.006G191800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
12 Sobic.009G015900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
13 Sobic.003G034600 CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
14 Sobic.002G276000 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
15 Sobic.004G285900 HMG1/2, putative, expressed -
16 Sobic.006G102900 expressed protein -
17 Sobic.001G529400 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
18 Sobic.002G162300 expressed protein K11270: chromosome transmission fidelity protein 8
19 Sobic.010G115200 ribosomal protein L7Ae, putative, expressed K11129: NHP2, H/ACA ribonucleoprotein complex subunit 2
20 Sobic.001G261549 - -


Gene co-expression network
sample Sobic004G170500 Sobic004G170500 Sobic006G076400 Sobic006G076400 Sobic004G170500--Sobic006G076400 Sobic003G057100 Sobic003G057100 Sobic004G170500--Sobic003G057100 Sobic006G134900 Sobic006G134900 Sobic004G170500--Sobic006G134900 Sobic001G078600 Sobic001G078600 Sobic004G170500--Sobic001G078600 Sobic004G279601 Sobic004G279601 Sobic004G170500--Sobic004G279601 Sobic003G347900 Sobic003G347900 Sobic004G170500--Sobic003G347900 Sobic006G081800 Sobic006G081800 Sobic004G170500--Sobic006G081800 Sobic002G136600 Sobic002G136600 Sobic004G170500--Sobic002G136600 Sobic001G205000 Sobic001G205000 Sobic004G170500--Sobic001G205000 Sobic006G076400--Sobic004G279601 Sobic006G076400--Sobic004G170500 Sobic006G076400--Sobic001G078600 Sobic010G274000 Sobic010G274000 Sobic006G076400--Sobic010G274000 Sobic006G116500 Sobic006G116500 Sobic006G076400--Sobic006G116500 Sobic004G355500 Sobic004G355500 Sobic006G076400--Sobic004G355500 Sobic006G102900 Sobic006G102900 Sobic006G076400--Sobic006G102900 Sobic007G154500 Sobic007G154500 Sobic006G076400--Sobic007G154500 Sobic001G070300 Sobic001G070300 Sobic006G076400--Sobic001G070300 Sobic002G276000 Sobic002G276000 Sobic003G057100--Sobic002G276000 Sobic001G054800 Sobic001G054800 Sobic003G057100--Sobic001G054800 Sobic001G529400 Sobic001G529400 Sobic003G057100--Sobic001G529400 Sobic003G057100--Sobic003G347900 Sobic002G291066 Sobic002G291066 Sobic003G057100--Sobic002G291066 Sobic010G047100 Sobic010G047100 Sobic003G057100--Sobic010G047100 Sobic001G009700 Sobic001G009700 Sobic003G057100--Sobic001G009700 Sobic006G191800 Sobic006G191800 Sobic003G057100--Sobic006G191800 Sobic003G057100--Sobic004G170500 Sobic006G134900--Sobic006G081800 Sobic001G169800 Sobic001G169800 Sobic006G134900--Sobic001G169800 Sobic007G176800 Sobic007G176800 Sobic006G134900--Sobic007G176800 Sobic006G134900--Sobic004G170500 Sobic006G189200 Sobic006G189200 Sobic006G134900--Sobic006G189200 Sobic006G134900--Sobic006G116500 Sobic001G142000 Sobic001G142000 Sobic006G134900--Sobic001G142000 Sobic006G134900--Sobic001G078600 Sobic001G105800 Sobic001G105800 Sobic006G134900--Sobic001G105800 Sobic001G078600--Sobic006G102900 Sobic002G426800 Sobic002G426800 Sobic001G078600--Sobic002G426800 Sobic001G078600--Sobic010G274000 Sobic005G144600 Sobic005G144600 Sobic001G078600--Sobic005G144600 Sobic004G197400 Sobic004G197400 Sobic001G078600--Sobic004G197400 Sobic004G285900 Sobic004G285900 Sobic001G078600--Sobic004G285900 Sobic001G078600--Sobic006G116500 Sobic001G528600 Sobic001G528600 Sobic001G078600--Sobic001G528600 Sobic001G078600--Sobic007G154500 Sobic004G279601--Sobic001G205000 Sobic004G279601--Sobic006G076400 Sobic004G279601--Sobic004G285900 Sobic004G279601--Sobic001G078600 Sobic004G279601--Sobic006G081800 Sobic004G205300 Sobic004G205300 Sobic004G279601--Sobic004G205300 Sobic007G214700 Sobic007G214700 Sobic004G279601--Sobic007G214700 Sobic004G279601--Sobic003G057100 Sobic001G261549 Sobic001G261549 Sobic004G279601--Sobic001G261549 Sobic006G057200 Sobic006G057200 Sobic003G347900--Sobic006G057200 Sobic007G198000 Sobic007G198000 Sobic003G347900--Sobic007G198000 Sobic001G313200 Sobic001G313200 Sobic003G347900--Sobic001G313200 Sobic003G347900--Sobic001G529400 Sobic003G347900--Sobic006G191800 Sobic003G347900--Sobic002G276000 Sobic003G347900--Sobic010G047100 Sobic003G078200 Sobic003G078200 Sobic003G347900--Sobic003G078200 Sobic003G347900--Sobic003G057100 Sobic006G081800--Sobic006G134900 Sobic004G229200 Sobic004G229200 Sobic006G081800--Sobic004G229200 Sobic006G081800--Sobic001G169800 Sobic006G081800--Sobic001G105800 Sobic007G017700 Sobic007G017700 Sobic006G081800--Sobic007G017700 Sobic002G289800 Sobic002G289800 Sobic006G081800--Sobic002G289800 Sobic001G238900 Sobic001G238900 Sobic006G081800--Sobic001G238900 Sobic002G246900 Sobic002G246900 Sobic006G081800--Sobic002G246900 Sobic006G081800--Sobic004G279601 Sobic002G074200 Sobic002G074200 Sobic002G136600--Sobic002G074200 Sobic003G375100 Sobic003G375100 Sobic002G136600--Sobic003G375100 Sobic002G136600--Sobic004G170500 Sobic004G252100 Sobic004G252100 Sobic002G136600--Sobic004G252100 Sobic002G136600--Sobic001G529400 Sobic003G125332 Sobic003G125332 Sobic002G136600--Sobic003G125332 Sobic003G276500 Sobic003G276500 Sobic002G136600--Sobic003G276500 Sobic007G195800 Sobic007G195800 Sobic002G136600--Sobic007G195800 Sobic010G101100 Sobic010G101100 Sobic002G136600--Sobic010G101100 Sobic001G205000--Sobic004G279601 Sobic007G207700 Sobic007G207700 Sobic001G205000--Sobic007G207700 Sobic003G328500 Sobic003G328500 Sobic001G205000--Sobic003G328500 Sobic001G205000--Sobic004G285900 Sobic006G134200 Sobic006G134200 Sobic001G205000--Sobic006G134200 Sobic001G205000--Sobic003G057100 Sobic005G016300 Sobic005G016300 Sobic001G205000--Sobic005G016300 Sobic001G205000--Sobic001G078600 Sobic001G205000--Sobic006G076400
Octagon: transcription factors


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