Gene annotation
Transcriptome id Sobic.006G108700.1
Synonym Sb06g019120, RKL1
Functional annotation atypical receptor-like kinase MARK, putative, expressed
UniProt A0A1B6PLD8
Pfam PF08263 PF00069
Panther DB PTHR27008 PTHR27008:SF45
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT1G48480 : receptor-like kinase 1
RAP-DB (Rice) LOC_Os04g38910.1 : atypical receptor-like kinase MARK, putative, expressed
MaizeGDB (Corn) Zm00025a011103
Brachypodium KQJ98335 , KQJ83001
Barley HORVU2Hr1G080770.3 , HORVU1Hr1G069510.4 , HORVU1Hr1G069510.6 , HORVU1Hr1G069510.7 , HORVU1Hr1G069510.1 , HORVU1Hr1G069510.2 , HORVU7Hr1G043470.1 , HORVU7Hr1G043470.2 , HORVU0Hr1G012920.2 , HORVU0Hr1G012920.1 , HORVU2Hr1G080770.4 , HORVU2Hr1G080770.5 , HORVU2Hr1G080770.1
Wheat TraesCS7B02G121600 , TraesCS7A02G214300 , TraesCS4B02G171300 , TraesCS1D02G301400 , TraesCS7D02G216400 , TraesCS1B02G311700 , TraesCS2B02G344900 , TraesCS2D02G325900 , TraesCS2A02G337000 , TraesCS6D02G402600 , TraesCS1B02G311800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G108700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G004500 expressed protein -
2 Sobic.003G399400 expressed protein -
3 Sobic.001G205000 ATEB1A-like microtubule associated protein, putative, expressed K10436: microtubule-associated protein, RP/EB family
4 Sobic.005G016300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.004G225400 PCF-like (ClassI) Subclade 2 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
6 Sobic.006G228100 glycosyl hydrolases family 16 protein, protein, expressed K08235: xyloglucan:xyloglucosyl transferase
7 Sobic.009G159600 ATROPGEF7/ROPGEF7, putative, expressed -
8 Sobic.009G178900 histone H3, putative, expressed K11253: histone H3
9 Sobic.001G530300 HOTHEAD precursor, putative, expressed -
10 Sobic.001G216800 expressed protein -
11 Sobic.001G054800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AT hook-containing DNA-binding protein, putative, expressed K11275: histone H1/5
12 Sobic.001G488900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
13 Sobic.002G247800 Highest expression level in primordial inflorescence(PubMedID : 27501690)@OsSPL17 - SBP-box gene family member, expressed -
14 Sobic.002G219500 ATPase, putative, expressed -
15 Sobic.003G057100 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
16 Sobic.005G210600 expressed protein -
17 Sobic.004G323100 SCP-like extracellular protein, expressed -
18 Sobic.006G271100 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
19 Sobic.002G227900 gibberellin receptor GID1L2, putative, expressed -
20 Sobic.007G225400 phosphate-induced protein 1 conserved region domain containing protein, expressed -


Gene co-expression network
sample Sobic006G108700 Sobic006G108700 Sobic002G004500 Sobic002G004500 Sobic006G108700--Sobic002G004500 Sobic003G399400 Sobic003G399400 Sobic006G108700--Sobic003G399400 Sobic001G205000 Sobic001G205000 Sobic006G108700--Sobic001G205000 Sobic005G016300 Sobic005G016300 Sobic006G108700--Sobic005G016300 Sobic004G225400 Sobic004G225400 Sobic006G108700--Sobic004G225400 Sobic006G228100 Sobic006G228100 Sobic006G108700--Sobic006G228100 Sobic009G159600 Sobic009G159600 Sobic006G108700--Sobic009G159600 Sobic009G178900 Sobic009G178900 Sobic006G108700--Sobic009G178900 Sobic001G530300 Sobic001G530300 Sobic006G108700--Sobic001G530300 Sobic002G004500--Sobic003G399400 Sobic002G004500--Sobic006G108700 Sobic002G004500--Sobic006G228100 Sobic006G271100 Sobic006G271100 Sobic002G004500--Sobic006G271100 Sobic001G399400 Sobic001G399400 Sobic002G004500--Sobic001G399400 Sobic002G219500 Sobic002G219500 Sobic002G004500--Sobic002G219500 Sobic002G004500--Sobic004G225400 Sobic003G184500 Sobic003G184500 Sobic002G004500--Sobic003G184500 Sobic002G004500--Sobic001G530300 Sobic003G399400--Sobic002G004500 Sobic003G399400--Sobic002G219500 Sobic003G399400--Sobic003G184500 Sobic003G399400--Sobic006G108700 Sobic003G399400--Sobic006G271100 Sobic003G399400--Sobic009G159600 Sobic003G399400--Sobic001G399400 Sobic001G451800 Sobic001G451800 Sobic003G399400--Sobic001G451800 Sobic003G399400--Sobic005G016300 Sobic004G279601 Sobic004G279601 Sobic001G205000--Sobic004G279601 Sobic007G207700 Sobic007G207700 Sobic001G205000--Sobic007G207700 Sobic003G328500 Sobic003G328500 Sobic001G205000--Sobic003G328500 Sobic004G285900 Sobic004G285900 Sobic001G205000--Sobic004G285900 Sobic006G134200 Sobic006G134200 Sobic001G205000--Sobic006G134200 Sobic003G057100 Sobic003G057100 Sobic001G205000--Sobic003G057100 Sobic001G205000--Sobic005G016300 Sobic001G078600 Sobic001G078600 Sobic001G205000--Sobic001G078600 Sobic006G076400 Sobic006G076400 Sobic001G205000--Sobic006G076400 Sobic005G016300--Sobic007G207700 Sobic004G077100 Sobic004G077100 Sobic005G016300--Sobic004G077100 Sobic001G075400 Sobic001G075400 Sobic005G016300--Sobic001G075400 Sobic005G210600 Sobic005G210600 Sobic005G016300--Sobic005G210600 Sobic005G016300--Sobic003G328500 Sobic005G016300--Sobic006G134200 Sobic010G111200 Sobic010G111200 Sobic005G016300--Sobic010G111200 Sobic005G016300--Sobic001G205000 Sobic002G313000 Sobic002G313000 Sobic005G016300--Sobic002G313000 Sobic004G225400--Sobic006G228100 Sobic004G225400--Sobic001G530300 Sobic004G225400--Sobic006G271100 Sobic009G070000 Sobic009G070000 Sobic004G225400--Sobic009G070000 Sobic004G225400--Sobic002G219500 Sobic007G017900 Sobic007G017900 Sobic004G225400--Sobic007G017900 Sobic004G225400--Sobic002G004500 Sobic004G225400--Sobic001G399400 Sobic005G111600 Sobic005G111600 Sobic004G225400--Sobic005G111600 Sobic006G228100--Sobic001G530300 Sobic006G228100--Sobic004G225400 Sobic006G228100--Sobic006G271100 Sobic006G228100--Sobic009G070000 Sobic006G228100--Sobic005G111600 Sobic006G228100--Sobic002G004500 Sobic010G246500 Sobic010G246500 Sobic006G228100--Sobic010G246500 Sobic006G228100--Sobic001G399400 Sobic008G137500 Sobic008G137500 Sobic006G228100--Sobic008G137500 Sobic004G259101 Sobic004G259101 Sobic009G159600--Sobic004G259101 Sobic003G349800 Sobic003G349800 Sobic009G159600--Sobic003G349800 Sobic009G159600--Sobic003G399400 Sobic009G159600--Sobic002G219500 Sobic001G258100 Sobic001G258100 Sobic009G159600--Sobic001G258100 Sobic009G159600--Sobic004G225400 Sobic009G159600--Sobic002G004500 Sobic001G026700 Sobic001G026700 Sobic009G159600--Sobic001G026700 Sobic003G174900 Sobic003G174900 Sobic009G159600--Sobic003G174900 Sobic001G511200 Sobic001G511200 Sobic009G178900--Sobic001G511200 Sobic006G069500 Sobic006G069500 Sobic009G178900--Sobic006G069500 Sobic003G273800 Sobic003G273800 Sobic009G178900--Sobic003G273800 Sobic004G180400 Sobic004G180400 Sobic009G178900--Sobic004G180400 Sobic003G364700 Sobic003G364700 Sobic009G178900--Sobic003G364700 Sobic009G233600 Sobic009G233600 Sobic009G178900--Sobic009G233600 Sobic009G178900--Sobic004G077100 Sobic009G178900--Sobic005G016300 Sobic009G178900--Sobic006G271100 Sobic001G530300--Sobic006G228100 Sobic001G530300--Sobic004G225400 Sobic001G530300--Sobic007G017900 Sobic001G530300--Sobic006G271100 Sobic001G530300--Sobic010G246500 Sobic001G530300--Sobic009G070000 Sobic001G530300--Sobic002G004500 Sobic007G153400 Sobic007G153400 Sobic001G530300--Sobic007G153400 Sobic009G229100 Sobic009G229100 Sobic001G530300--Sobic009G229100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.