Gene annotation
Transcriptome id Sobic.009G159600.1
Synonym ROPGEF7, Sb09g022250, ATROPGEF7
Functional annotation ATROPGEF7/ROPGEF7, putative, expressed
UniProt C5YZ67
Pfam PF03759
Panther DB PTHR33101 PTHR33101:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005089; Rho guanyl-nucleotide exchange factor activity


Orthologs (automatic annotation)
TAIR AT5G02010 : RHO guanyl-nucleotide exchange factor 7
RAP-DB (Rice) LOC_Os05g38000.1 : ATROPGEF7/ROPGEF7, putative, expressed
MaizeGDB (Corn) Zm00025a014490 , Zm00025a003277 , Zm00025a026849 , Zm00025a047994 , Zm00025a037192
Brachypodium KQK10577 , PNT71128 , KQJ94354 , PNT71127 , KQK05954 , PNT61636 , KQJ91296
Barley HORVU3Hr1G085680.25 , HORVU3Hr1G085680.24 , HORVU3Hr1G085680.12 , HORVU3Hr1G085680.13 , HORVU3Hr1G085680.10 , HORVU3Hr1G085680.11 , HORVU3Hr1G085680.16 , HORVU3Hr1G085680.14 , HORVU3Hr1G085680.15 , HORVU5Hr1G085510.1 , HORVU1Hr1G053350.9 , HORVU1Hr1G053350.8 , HORVU1Hr1G053350.3 , HORVU1Hr1G053350.2 , HORVU1Hr1G053350.1 , HORVU1Hr1G053350.7 , HORVU1Hr1G053350.6 , HORVU1Hr1G053350.5 , HORVU1Hr1G053350.4 , HORVU1Hr1G072910.12 , HORVU1Hr1G072910.13 , HORVU1Hr1G072910.10 , HORVU1Hr1G072910.11 , HORVU1Hr1G072910.14 , HORVU1Hr1G072910.15 , HORVU1Hr1G072910.1 , HORVU1Hr1G072910.2 , HORVU1Hr1G072910.3 , HORVU1Hr1G072910.4 , HORVU1Hr1G072910.5 , HORVU1Hr1G072910.6 , HORVU1Hr1G072910.7 , HORVU1Hr1G072910.8 , HORVU1Hr1G072910.9 , HORVU3Hr1G085680.23 , HORVU3Hr1G085680.22 , HORVU3Hr1G085680.21 , HORVU3Hr1G085680.1 , HORVU3Hr1G085680.2 , HORVU3Hr1G085680.3 , HORVU3Hr1G085680.6 , HORVU3Hr1G085680.7 , HORVU3Hr1G085680.8 , HORVU3Hr1G085680.9
Wheat TraesCS6D02G388300 , TraesCS1B02G222700 , TraesCS1D02G211900 , TraesCS5A02G340900 , TraesCS1D02G280000 , TraesCS1A02G208700 , TraesCS5D02G346100 , TraesCS6B02G449200 , TraesCS5B02G339200 , TraesCS1A02G280900 , TraesCS1A02G280900 , TraesCS3A02G364400 , TraesCS1B02G289900 , TraesCS3B02G396500 , TraesCS3D02G357800 , TraesCS3D02G357800 , TraesCS3D02G357800 , TraesCS3D02G357800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G259101 - -
2 Sobic.003G349800 domain of unknown function DUF966 domain containing protein, expressed -
3 Sobic.003G399400 expressed protein -
4 Sobic.002G219500 ATPase, putative, expressed -
5 Sobic.001G258100 OsSub60 - Putative Subtilisin homologue, expressed -
6 Sobic.004G225400 PCF-like (ClassI) Subclade 2 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
7 Sobic.002G004500 expressed protein -
8 Sobic.001G026700 glucan endo-1,3-beta-glucosidase-related, putative, expressed -
9 Sobic.003G174900 fimbrin-like protein 2, putative, expressed K17336: plastin-3
10 Sobic.001G375900 Brix domain containing protein, putative, expressed -
11 Sobic.005G117100 expressed protein -
12 Sobic.001G399400 calmodulin binding protein, putative, expressed -
13 Sobic.006G108700 atypical receptor-like kinase MARK, putative, expressed -
14 Sobic.002G348700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carboxyl-terminal peptidase, putative, expressed -
15 Sobic.009G259500 receptor protein kinase CLAVATA1 precursor, putative, expressed -
16 Sobic.001G514400 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
17 Sobic.001G518300 expressed protein -
18 Sobic.004G154600 expressed protein -
19 Sobic.004G180400 remorin family protein, putative, expressed -
20 Sobic.008G156900 similar to Auxin-responsive protein IAA30(PubMedID : 29862293)@"domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf"(PubMedID : 20499123)@OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA


Gene co-expression network
sample Sobic009G159600 Sobic009G159600 Sobic004G259101 Sobic004G259101 Sobic009G159600--Sobic004G259101 Sobic003G349800 Sobic003G349800 Sobic009G159600--Sobic003G349800 Sobic003G399400 Sobic003G399400 Sobic009G159600--Sobic003G399400 Sobic002G219500 Sobic002G219500 Sobic009G159600--Sobic002G219500 Sobic001G258100 Sobic001G258100 Sobic009G159600--Sobic001G258100 Sobic004G225400 Sobic004G225400 Sobic009G159600--Sobic004G225400 Sobic002G004500 Sobic002G004500 Sobic009G159600--Sobic002G004500 Sobic001G026700 Sobic001G026700 Sobic009G159600--Sobic001G026700 Sobic003G174900 Sobic003G174900 Sobic009G159600--Sobic003G174900 Sobic004G259101--Sobic001G258100 Sobic002G072700 Sobic002G072700 Sobic004G259101--Sobic002G072700 Sobic004G154600 Sobic004G154600 Sobic004G259101--Sobic004G154600 Sobic004G259101--Sobic009G159600 Sobic001G267800 Sobic001G267800 Sobic004G259101--Sobic001G267800 Sobic009G259500 Sobic009G259500 Sobic004G259101--Sobic009G259500 Sobic010G010900 Sobic010G010900 Sobic004G259101--Sobic010G010900 Sobic001G514400 Sobic001G514400 Sobic004G259101--Sobic001G514400 Sobic009G248900 Sobic009G248900 Sobic004G259101--Sobic009G248900 Sobic003G349800--Sobic009G159600 Sobic003G349800--Sobic004G225400 Sobic003G349800--Sobic002G219500 Sobic001G375900 Sobic001G375900 Sobic003G349800--Sobic001G375900 Sobic003G048700 Sobic003G048700 Sobic003G349800--Sobic003G048700 Sobic003G349800--Sobic004G259101 Sobic005G117100 Sobic005G117100 Sobic003G349800--Sobic005G117100 Sobic003G349800--Sobic003G399400 Sobic006G108700 Sobic006G108700 Sobic003G349800--Sobic006G108700 Sobic003G399400--Sobic002G004500 Sobic003G399400--Sobic002G219500 Sobic003G184500 Sobic003G184500 Sobic003G399400--Sobic003G184500 Sobic003G399400--Sobic006G108700 Sobic006G271100 Sobic006G271100 Sobic003G399400--Sobic006G271100 Sobic003G399400--Sobic009G159600 Sobic001G399400 Sobic001G399400 Sobic003G399400--Sobic001G399400 Sobic001G451800 Sobic001G451800 Sobic003G399400--Sobic001G451800 Sobic005G016300 Sobic005G016300 Sobic003G399400--Sobic005G016300 Sobic002G219500--Sobic001G399400 Sobic002G219500--Sobic003G399400 Sobic002G219500--Sobic006G271100 Sobic002G219500--Sobic004G225400 Sobic005G188400 Sobic005G188400 Sobic002G219500--Sobic005G188400 Sobic002G219500--Sobic003G184500 Sobic006G228100 Sobic006G228100 Sobic002G219500--Sobic006G228100 Sobic002G219500--Sobic002G004500 Sobic002G219500--Sobic009G159600 Sobic001G258100--Sobic004G259101 Sobic001G258100--Sobic009G259500 Sobic001G258100--Sobic003G174900 Sobic001G258100--Sobic002G072700 Sobic001G258100--Sobic010G010900 Sobic004G168600 Sobic004G168600 Sobic001G258100--Sobic004G168600 Sobic007G142900 Sobic007G142900 Sobic001G258100--Sobic007G142900 Sobic001G258100--Sobic001G267800 Sobic001G258100--Sobic001G514400 Sobic004G225400--Sobic006G228100 Sobic001G530300 Sobic001G530300 Sobic004G225400--Sobic001G530300 Sobic004G225400--Sobic006G271100 Sobic009G070000 Sobic009G070000 Sobic004G225400--Sobic009G070000 Sobic004G225400--Sobic002G219500 Sobic007G017900 Sobic007G017900 Sobic004G225400--Sobic007G017900 Sobic004G225400--Sobic002G004500 Sobic004G225400--Sobic001G399400 Sobic005G111600 Sobic005G111600 Sobic004G225400--Sobic005G111600 Sobic002G004500--Sobic003G399400 Sobic002G004500--Sobic006G108700 Sobic002G004500--Sobic006G228100 Sobic002G004500--Sobic006G271100 Sobic002G004500--Sobic001G399400 Sobic002G004500--Sobic002G219500 Sobic002G004500--Sobic004G225400 Sobic002G004500--Sobic003G184500 Sobic002G004500--Sobic001G530300 Sobic001G518300 Sobic001G518300 Sobic001G026700--Sobic001G518300 Sobic001G026700--Sobic010G010900 Sobic001G397700 Sobic001G397700 Sobic001G026700--Sobic001G397700 Sobic001G026700--Sobic004G259101 Sobic003G300100 Sobic003G300100 Sobic001G026700--Sobic003G300100 Sobic001G026700--Sobic001G258100 Sobic008G156900 Sobic008G156900 Sobic001G026700--Sobic008G156900 Sobic001G026700--Sobic001G514400 Sobic001G026700--Sobic001G267800 Sobic004G199700 Sobic004G199700 Sobic003G174900--Sobic004G199700 Sobic002G216600 Sobic002G216600 Sobic003G174900--Sobic002G216600 Sobic003G174900--Sobic009G259500 Sobic001G361800 Sobic001G361800 Sobic003G174900--Sobic001G361800 Sobic003G174900--Sobic001G258100 Sobic005G204100 Sobic005G204100 Sobic003G174900--Sobic005G204100 Sobic002G348700 Sobic002G348700 Sobic003G174900--Sobic002G348700 Sobic008G086200 Sobic008G086200 Sobic003G174900--Sobic008G086200 Sobic004G205500 Sobic004G205500 Sobic003G174900--Sobic004G205500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.