Gene annotation
Transcriptome id Sobic.003G349800.1
Synonym Sb03g039280
Functional annotation domain of unknown function DUF966 domain containing protein, expressed
UniProt C5XP42
Pfam PF06136
Panther DB PTHR31083 PTHR31083:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G59790 : Domain of unknown function (DUF966)
RAP-DB (Rice) LOC_Os01g62200.1 : domain of unknown function DUF966 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a026938 , Zm00025a039692
Brachypodium KQK10500
Barley HORVU3Hr1G086700.6 , HORVU3Hr1G086700.7 , HORVU3Hr1G086700.1 , HORVU3Hr1G086700.2 , HORVU3Hr1G086700.8
Wheat TraesCS3B02G389500 , TraesCS3A02G356700 , TraesCS3D02G350800
Populus -


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cDNA sequences
Sobic.003G349800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G159600 ATROPGEF7/ROPGEF7, putative, expressed -
2 Sobic.004G225400 PCF-like (ClassI) Subclade 2 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
3 Sobic.002G219500 ATPase, putative, expressed -
4 Sobic.001G375900 Brix domain containing protein, putative, expressed -
5 Sobic.003G048700 AGC_PVPK_like_kin82y.3 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
6 Sobic.004G259101 - -
7 Sobic.005G117100 expressed protein -
8 Sobic.003G399400 expressed protein -
9 Sobic.006G108700 atypical receptor-like kinase MARK, putative, expressed -
10 Sobic.002G004500 expressed protein -
11 Sobic.010G145200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CPuORF31 - conserved peptide uORF-containing transcript, expressed -
12 Sobic.003G047300 phototropic-responsive NPH3 family protein, putative, expressed -
13 Sobic.006G228100 glycosyl hydrolases family 16 protein, protein, expressed K08235: xyloglucan:xyloglucosyl transferase
14 Sobic.001G066100 CIN-like (ClassII) Subclade 14 TCP(PubMedID : 21444336)@basic helix-loop-helix (bHLH) transcription factor(PubMedID : 23915383)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
15 Sobic.002G348700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carboxyl-terminal peptidase, putative, expressed -
16 Sobic.009G070000 "GW5/qSW5(Ortholog in rice:Liu et al., 2017)"(PubMedID : 31659922)@IQ calmodulin-binding motif family protein, expressed -
17 Sobic.006G271100 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
18 Sobic.001G530300 HOTHEAD precursor, putative, expressed -
19 Sobic.001G399400 calmodulin binding protein, putative, expressed -
20 Sobic.003G290600 stress-induced protein, putative, expressed -


Gene co-expression network
sample Sobic003G349800 Sobic003G349800 Sobic009G159600 Sobic009G159600 Sobic003G349800--Sobic009G159600 Sobic004G225400 Sobic004G225400 Sobic003G349800--Sobic004G225400 Sobic002G219500 Sobic002G219500 Sobic003G349800--Sobic002G219500 Sobic001G375900 Sobic001G375900 Sobic003G349800--Sobic001G375900 Sobic003G048700 Sobic003G048700 Sobic003G349800--Sobic003G048700 Sobic004G259101 Sobic004G259101 Sobic003G349800--Sobic004G259101 Sobic005G117100 Sobic005G117100 Sobic003G349800--Sobic005G117100 Sobic003G399400 Sobic003G399400 Sobic003G349800--Sobic003G399400 Sobic006G108700 Sobic006G108700 Sobic003G349800--Sobic006G108700 Sobic009G159600--Sobic004G259101 Sobic009G159600--Sobic003G349800 Sobic009G159600--Sobic003G399400 Sobic009G159600--Sobic002G219500 Sobic001G258100 Sobic001G258100 Sobic009G159600--Sobic001G258100 Sobic009G159600--Sobic004G225400 Sobic002G004500 Sobic002G004500 Sobic009G159600--Sobic002G004500 Sobic001G026700 Sobic001G026700 Sobic009G159600--Sobic001G026700 Sobic003G174900 Sobic003G174900 Sobic009G159600--Sobic003G174900 Sobic006G228100 Sobic006G228100 Sobic004G225400--Sobic006G228100 Sobic001G530300 Sobic001G530300 Sobic004G225400--Sobic001G530300 Sobic006G271100 Sobic006G271100 Sobic004G225400--Sobic006G271100 Sobic009G070000 Sobic009G070000 Sobic004G225400--Sobic009G070000 Sobic004G225400--Sobic002G219500 Sobic007G017900 Sobic007G017900 Sobic004G225400--Sobic007G017900 Sobic004G225400--Sobic002G004500 Sobic001G399400 Sobic001G399400 Sobic004G225400--Sobic001G399400 Sobic005G111600 Sobic005G111600 Sobic004G225400--Sobic005G111600 Sobic002G219500--Sobic001G399400 Sobic002G219500--Sobic003G399400 Sobic002G219500--Sobic006G271100 Sobic002G219500--Sobic004G225400 Sobic005G188400 Sobic005G188400 Sobic002G219500--Sobic005G188400 Sobic003G184500 Sobic003G184500 Sobic002G219500--Sobic003G184500 Sobic002G219500--Sobic006G228100 Sobic002G219500--Sobic002G004500 Sobic002G219500--Sobic009G159600 Sobic001G375900--Sobic003G349800 Sobic001G375900--Sobic009G159600 Sobic001G375900--Sobic004G225400 Sobic009G178900 Sobic009G178900 Sobic001G375900--Sobic009G178900 Sobic001G375900--Sobic003G399400 Sobic001G375900--Sobic005G117100 Sobic001G511200 Sobic001G511200 Sobic001G375900--Sobic001G511200 Sobic004G180400 Sobic004G180400 Sobic001G375900--Sobic004G180400 Sobic001G375900--Sobic006G271100 Sobic002G018901 Sobic002G018901 Sobic003G048700--Sobic002G018901 Sobic006G073150 Sobic006G073150 Sobic003G048700--Sobic006G073150 Sobic003G048700--Sobic003G349800 Sobic003G048700--Sobic004G225400 Sobic007G072800 Sobic007G072800 Sobic003G048700--Sobic007G072800 Sobic001G451200 Sobic001G451200 Sobic003G048700--Sobic001G451200 Sobic006G004000 Sobic006G004000 Sobic003G048700--Sobic006G004000 Sobic001G267266 Sobic001G267266 Sobic003G048700--Sobic001G267266 Sobic006G086900 Sobic006G086900 Sobic003G048700--Sobic006G086900 Sobic004G259101--Sobic001G258100 Sobic002G072700 Sobic002G072700 Sobic004G259101--Sobic002G072700 Sobic004G154600 Sobic004G154600 Sobic004G259101--Sobic004G154600 Sobic004G259101--Sobic009G159600 Sobic001G267800 Sobic001G267800 Sobic004G259101--Sobic001G267800 Sobic009G259500 Sobic009G259500 Sobic004G259101--Sobic009G259500 Sobic010G010900 Sobic010G010900 Sobic004G259101--Sobic010G010900 Sobic001G514400 Sobic001G514400 Sobic004G259101--Sobic001G514400 Sobic009G248900 Sobic009G248900 Sobic004G259101--Sobic009G248900 Sobic003G290600 Sobic003G290600 Sobic005G117100--Sobic003G290600 Sobic005G117100--Sobic006G073150 Sobic005G117100--Sobic009G159600 Sobic005G117100--Sobic004G259101 Sobic005G117100--Sobic001G267266 Sobic001G339400 Sobic001G339400 Sobic005G117100--Sobic001G339400 Sobic003G029300 Sobic003G029300 Sobic005G117100--Sobic003G029300 Sobic005G117100--Sobic003G349800 Sobic003G320500 Sobic003G320500 Sobic005G117100--Sobic003G320500 Sobic003G399400--Sobic002G004500 Sobic003G399400--Sobic002G219500 Sobic003G399400--Sobic003G184500 Sobic003G399400--Sobic006G108700 Sobic003G399400--Sobic006G271100 Sobic003G399400--Sobic009G159600 Sobic003G399400--Sobic001G399400 Sobic001G451800 Sobic001G451800 Sobic003G399400--Sobic001G451800 Sobic005G016300 Sobic005G016300 Sobic003G399400--Sobic005G016300 Sobic006G108700--Sobic002G004500 Sobic006G108700--Sobic003G399400 Sobic001G205000 Sobic001G205000 Sobic006G108700--Sobic001G205000 Sobic006G108700--Sobic005G016300 Sobic006G108700--Sobic004G225400 Sobic006G108700--Sobic006G228100 Sobic006G108700--Sobic009G159600 Sobic006G108700--Sobic009G178900 Sobic006G108700--Sobic001G530300
Octagon: transcription factors


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