Gene annotation
Transcriptome id Sobic.002G004500.1
Synonym Sb02g000610
Functional annotation expressed protein
UniProt C5X758
Pfam PF00931
Panther DB PTHR23155 PTHR23155:SF411
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G45490 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os07g01530.1 : expressed protein
MaizeGDB (Corn) Zm00025a016261
Brachypodium PNT77221
Barley HORVU2Hr1G064140.11 , HORVU2Hr1G064140.56 , HORVU2Hr1G064140.55 , HORVU2Hr1G064140.37
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G399400 expressed protein -
2 Sobic.006G108700 atypical receptor-like kinase MARK, putative, expressed -
3 Sobic.006G228100 glycosyl hydrolases family 16 protein, protein, expressed K08235: xyloglucan:xyloglucosyl transferase
4 Sobic.006G271100 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
5 Sobic.001G399400 calmodulin binding protein, putative, expressed -
6 Sobic.002G219500 ATPase, putative, expressed -
7 Sobic.004G225400 PCF-like (ClassI) Subclade 2 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
8 Sobic.003G184500 carboxyl-terminal peptidase, putative, expressed -
9 Sobic.001G530300 HOTHEAD precursor, putative, expressed -
10 Sobic.001G451800 atypical receptor-like kinase MARK, putative, expressed -
11 Sobic.001G216800 expressed protein -
12 Sobic.009G070000 "GW5/qSW5(Ortholog in rice:Liu et al., 2017)"(PubMedID : 31659922)@IQ calmodulin-binding motif family protein, expressed -
13 Sobic.004G296100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.005G016300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.004G259101 - -
16 Sobic.009G159600 ATROPGEF7/ROPGEF7, putative, expressed -
17 Sobic.010G030100 homeobox associated leucine zipper, putative, expressed -
18 Sobic.001G409700 RNA recognition motif containing protein, putative, expressed -
19 Sobic.001G080600 expressed protein -
20 Sobic.001G267800 thaumatin-like protein 1 precursor, putative, expressed -


Gene co-expression network
sample Sobic002G004500 Sobic002G004500 Sobic003G399400 Sobic003G399400 Sobic002G004500--Sobic003G399400 Sobic006G108700 Sobic006G108700 Sobic002G004500--Sobic006G108700 Sobic006G228100 Sobic006G228100 Sobic002G004500--Sobic006G228100 Sobic006G271100 Sobic006G271100 Sobic002G004500--Sobic006G271100 Sobic001G399400 Sobic001G399400 Sobic002G004500--Sobic001G399400 Sobic002G219500 Sobic002G219500 Sobic002G004500--Sobic002G219500 Sobic004G225400 Sobic004G225400 Sobic002G004500--Sobic004G225400 Sobic003G184500 Sobic003G184500 Sobic002G004500--Sobic003G184500 Sobic001G530300 Sobic001G530300 Sobic002G004500--Sobic001G530300 Sobic003G399400--Sobic002G004500 Sobic003G399400--Sobic002G219500 Sobic003G399400--Sobic003G184500 Sobic003G399400--Sobic006G108700 Sobic003G399400--Sobic006G271100 Sobic009G159600 Sobic009G159600 Sobic003G399400--Sobic009G159600 Sobic003G399400--Sobic001G399400 Sobic001G451800 Sobic001G451800 Sobic003G399400--Sobic001G451800 Sobic005G016300 Sobic005G016300 Sobic003G399400--Sobic005G016300 Sobic006G108700--Sobic002G004500 Sobic006G108700--Sobic003G399400 Sobic001G205000 Sobic001G205000 Sobic006G108700--Sobic001G205000 Sobic006G108700--Sobic005G016300 Sobic006G108700--Sobic004G225400 Sobic006G108700--Sobic006G228100 Sobic006G108700--Sobic009G159600 Sobic009G178900 Sobic009G178900 Sobic006G108700--Sobic009G178900 Sobic006G108700--Sobic001G530300 Sobic006G228100--Sobic001G530300 Sobic006G228100--Sobic004G225400 Sobic006G228100--Sobic006G271100 Sobic009G070000 Sobic009G070000 Sobic006G228100--Sobic009G070000 Sobic005G111600 Sobic005G111600 Sobic006G228100--Sobic005G111600 Sobic006G228100--Sobic002G004500 Sobic010G246500 Sobic010G246500 Sobic006G228100--Sobic010G246500 Sobic006G228100--Sobic001G399400 Sobic008G137500 Sobic008G137500 Sobic006G228100--Sobic008G137500 Sobic006G271100--Sobic009G070000 Sobic003G047300 Sobic003G047300 Sobic006G271100--Sobic003G047300 Sobic006G271100--Sobic006G228100 Sobic006G271100--Sobic001G399400 Sobic004G049800 Sobic004G049800 Sobic006G271100--Sobic004G049800 Sobic001G511200 Sobic001G511200 Sobic006G271100--Sobic001G511200 Sobic006G271100--Sobic003G184500 Sobic009G229100 Sobic009G229100 Sobic006G271100--Sobic009G229100 Sobic006G271100--Sobic002G219500 Sobic001G399400--Sobic002G219500 Sobic001G399400--Sobic006G271100 Sobic001G399400--Sobic003G184500 Sobic001G399400--Sobic009G070000 Sobic001G399400--Sobic006G228100 Sobic001G399400--Sobic003G399400 Sobic001G399400--Sobic002G004500 Sobic005G188400 Sobic005G188400 Sobic001G399400--Sobic005G188400 Sobic004G077100 Sobic004G077100 Sobic001G399400--Sobic004G077100 Sobic002G219500--Sobic001G399400 Sobic002G219500--Sobic003G399400 Sobic002G219500--Sobic006G271100 Sobic002G219500--Sobic004G225400 Sobic002G219500--Sobic005G188400 Sobic002G219500--Sobic003G184500 Sobic002G219500--Sobic006G228100 Sobic002G219500--Sobic002G004500 Sobic002G219500--Sobic009G159600 Sobic004G225400--Sobic006G228100 Sobic004G225400--Sobic001G530300 Sobic004G225400--Sobic006G271100 Sobic004G225400--Sobic009G070000 Sobic004G225400--Sobic002G219500 Sobic007G017900 Sobic007G017900 Sobic004G225400--Sobic007G017900 Sobic004G225400--Sobic002G004500 Sobic004G225400--Sobic001G399400 Sobic004G225400--Sobic005G111600 Sobic001G430000 Sobic001G430000 Sobic003G184500--Sobic001G430000 Sobic003G184500--Sobic001G399400 Sobic008G107600 Sobic008G107600 Sobic003G184500--Sobic008G107600 Sobic003G184500--Sobic006G271100 Sobic002G359800 Sobic002G359800 Sobic003G184500--Sobic002G359800 Sobic002G184800 Sobic002G184800 Sobic003G184500--Sobic002G184800 Sobic003G184500--Sobic003G399400 Sobic003G184500--Sobic002G219500 Sobic003G023666 Sobic003G023666 Sobic003G184500--Sobic003G023666 Sobic001G530300--Sobic006G228100 Sobic001G530300--Sobic004G225400 Sobic001G530300--Sobic007G017900 Sobic001G530300--Sobic006G271100 Sobic001G530300--Sobic010G246500 Sobic001G530300--Sobic009G070000 Sobic001G530300--Sobic002G004500 Sobic007G153400 Sobic007G153400 Sobic001G530300--Sobic007G153400 Sobic001G530300--Sobic009G229100
Octagon: transcription factors


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