Gene annotation
Transcriptome id Sobic.001G409700.1
Synonym Sb01g038700
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5WNL3
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF421
NCBI CDD KOG0149; Predicted RNA-binding protein SEB4 (RRM superfamily)
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G54770 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os03g17760.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a001945 , Zm00025a052695 , Zm00025a033157 , Zm00025a042566
Brachypodium KQK01832 , KQK22196 , KQK18930 , KQK11638 , KQK11639
Barley HORVU4Hr1G057110.26 , HORVU4Hr1G057110.25 , HORVU4Hr1G057110.24 , HORVU4Hr1G057110.23 , HORVU4Hr1G057110.22 , HORVU4Hr1G057110.21 , HORVU4Hr1G057110.20 , HORVU4Hr1G057110.11 , HORVU6Hr1G078060.8 , HORVU6Hr1G078060.14 , HORVU6Hr1G078060.16 , HORVU6Hr1G078060.10 , HORVU6Hr1G078060.12 , HORVU4Hr1G057110.4 , HORVU4Hr1G057110.5 , HORVU4Hr1G057110.3 , HORVU7Hr1G036920.7 , HORVU7Hr1G036920.6 , HORVU7Hr1G036920.5 , HORVU7Hr1G036920.4 , HORVU7Hr1G036920.3 , HORVU7Hr1G036920.2 , HORVU7Hr1G036920.1 , HORVU7Hr1G036920.8 , HORVU4Hr1G057110.16 , HORVU4Hr1G057110.17 , HORVU4Hr1G057110.14 , HORVU4Hr1G057110.15 , HORVU4Hr1G057110.12 , HORVU4Hr1G057110.10 , HORVU4Hr1G057110.18 , HORVU4Hr1G057110.19 , HORVU6Hr1G078060.1 , HORVU6Hr1G078060.3 , HORVU6Hr1G078060.6 , HORVU7Hr1G036900.1
Wheat TraesCS7B02G084600 , TraesCS3D02G380100 , TraesCS3D02G380100 , TraesCS7D02G180800 , TraesCS3A02G389600 , TraesCS3A02G389600 , TraesCS4A02G106800 , TraesCS4A02G106800 , TraesCS4B02G197500 , TraesCS4B02G197500 , TraesCS7A02G178700 , TraesCS7A02G178700 , TraesCS4D02G198000 , TraesCS4D02G198000 , TraesCS4D02G198000 , TraesCS4D02G198000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G061400 leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed -
2 Sobic.006G054600 OsGrx_C8 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
3 Sobic.005G047100 actin, putative, expressed K10355: actin, other eukaryote
4 Sobic.004G156900 OsGrx_C8 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
5 Sobic.002G016400 monocopper oxidase, putative, expressed -
6 Sobic.001G514400 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
7 Sobic.008G077300 expressed protein -
8 Sobic.001G264300 hsp20/alpha crystallin family protein, putative, expressed -
9 Sobic.001G264400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hsp20/alpha crystallin family protein, putative, expressed -
10 Sobic.006G119000 X8 domain containing protein, expressed -
11 Sobic.006G030200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
12 Sobic.007G225400 phosphate-induced protein 1 conserved region domain containing protein, expressed -
13 Sobic.003G151900 peroxidase precursor, putative, expressed K00430: peroxidase
14 Sobic.004G170800 serine-aspartate repeat-containing protein I precursor, putative, expressed -
15 Sobic.001G397700 DNAJ heat shock N-terminal domain-containing protein, putative, expressed -
16 Sobic.003G420100 RNA recognition motif containing protein, putative, expressed K13207: CUGBP, BRUNOL, CUG-BP- and ETR3-like factor
17 Sobic.001G451800 atypical receptor-like kinase MARK, putative, expressed -
18 Sobic.005G121700 expressed protein -
19 Sobic.010G216600 expressed protein -
20 Sobic.004G297950 - -


Gene co-expression network
sample Sobic001G409700 Sobic001G409700 Sobic009G061400 Sobic009G061400 Sobic001G409700--Sobic009G061400 Sobic006G054600 Sobic006G054600 Sobic001G409700--Sobic006G054600 Sobic005G047100 Sobic005G047100 Sobic001G409700--Sobic005G047100 Sobic004G156900 Sobic004G156900 Sobic001G409700--Sobic004G156900 Sobic002G016400 Sobic002G016400 Sobic001G409700--Sobic002G016400 Sobic001G514400 Sobic001G514400 Sobic001G409700--Sobic001G514400 Sobic008G077300 Sobic008G077300 Sobic001G409700--Sobic008G077300 Sobic001G264300 Sobic001G264300 Sobic001G409700--Sobic001G264300 Sobic001G264400 Sobic001G264400 Sobic001G409700--Sobic001G264400 Sobic009G061400--Sobic002G016400 Sobic009G061400--Sobic001G409700 Sobic009G061400--Sobic004G156900 Sobic009G061400--Sobic006G054600 Sobic005G231300 Sobic005G231300 Sobic009G061400--Sobic005G231300 Sobic009G061400--Sobic008G077300 Sobic007G111700 Sobic007G111700 Sobic009G061400--Sobic007G111700 Sobic007G208100 Sobic007G208100 Sobic009G061400--Sobic007G208100 Sobic009G061400--Sobic001G264400 Sobic006G054600--Sobic004G156900 Sobic006G054600--Sobic002G016400 Sobic004G170900 Sobic004G170900 Sobic006G054600--Sobic004G170900 Sobic006G054600--Sobic005G047100 Sobic006G054600--Sobic009G061400 Sobic006G054600--Sobic001G264400 Sobic007G225400 Sobic007G225400 Sobic006G054600--Sobic007G225400 Sobic010G216600 Sobic010G216600 Sobic006G054600--Sobic010G216600 Sobic001G382700 Sobic001G382700 Sobic006G054600--Sobic001G382700 Sobic004G297950 Sobic004G297950 Sobic005G047100--Sobic004G297950 Sobic003G247600 Sobic003G247600 Sobic005G047100--Sobic003G247600 Sobic005G047100--Sobic007G225400 Sobic005G047100--Sobic004G170900 Sobic001G521300 Sobic001G521300 Sobic005G047100--Sobic001G521300 Sobic003G321400 Sobic003G321400 Sobic005G047100--Sobic003G321400 Sobic004G170800 Sobic004G170800 Sobic005G047100--Sobic004G170800 Sobic003G135400 Sobic003G135400 Sobic005G047100--Sobic003G135400 Sobic003G420100 Sobic003G420100 Sobic005G047100--Sobic003G420100 Sobic004G156900--Sobic006G054600 Sobic004G156900--Sobic001G264400 Sobic004G156900--Sobic009G061400 Sobic008G143000 Sobic008G143000 Sobic004G156900--Sobic008G143000 Sobic005G110600 Sobic005G110600 Sobic004G156900--Sobic005G110600 Sobic004G156900--Sobic008G077300 Sobic004G156900--Sobic004G170800 Sobic004G156900--Sobic004G170900 Sobic002G280300 Sobic002G280300 Sobic004G156900--Sobic002G280300 Sobic005G098400 Sobic005G098400 Sobic002G016400--Sobic005G098400 Sobic003G418300 Sobic003G418300 Sobic002G016400--Sobic003G418300 Sobic007G050500 Sobic007G050500 Sobic002G016400--Sobic007G050500 Sobic001G305300 Sobic001G305300 Sobic002G016400--Sobic001G305300 Sobic001G345200 Sobic001G345200 Sobic002G016400--Sobic001G345200 Sobic002G016400--Sobic007G208100 Sobic006G149300 Sobic006G149300 Sobic002G016400--Sobic006G149300 Sobic002G016400--Sobic001G382700 Sobic008G170400 Sobic008G170400 Sobic002G016400--Sobic008G170400 Sobic005G121700 Sobic005G121700 Sobic001G514400--Sobic005G121700 Sobic004G259101 Sobic004G259101 Sobic001G514400--Sobic004G259101 Sobic001G258100 Sobic001G258100 Sobic001G514400--Sobic001G258100 Sobic004G247300 Sobic004G247300 Sobic001G514400--Sobic004G247300 Sobic001G514400--Sobic001G409700 Sobic009G099700 Sobic009G099700 Sobic001G514400--Sobic009G099700 Sobic001G514400--Sobic009G061400 Sobic009G021700 Sobic009G021700 Sobic001G514400--Sobic009G021700 Sobic005G054700 Sobic005G054700 Sobic001G514400--Sobic005G054700 Sobic008G077300--Sobic001G264400 Sobic008G077300--Sobic005G231300 Sobic001G514300 Sobic001G514300 Sobic008G077300--Sobic001G514300 Sobic008G077300--Sobic005G121700 Sobic006G030200 Sobic006G030200 Sobic008G077300--Sobic006G030200 Sobic008G077300--Sobic007G208100 Sobic008G077300--Sobic002G016400 Sobic008G077300--Sobic004G297950 Sobic008G077300--Sobic004G156900 Sobic009G221800 Sobic009G221800 Sobic001G264300--Sobic009G221800 Sobic001G264300--Sobic003G321400 Sobic010G047600 Sobic010G047600 Sobic001G264300--Sobic010G047600 Sobic001G264300--Sobic001G264400 Sobic004G050700 Sobic004G050700 Sobic001G264300--Sobic004G050700 Sobic003G078900 Sobic003G078900 Sobic001G264300--Sobic003G078900 Sobic001G514200 Sobic001G514200 Sobic001G264300--Sobic001G514200 Sobic001G264300--Sobic004G170800 Sobic001G261460 Sobic001G261460 Sobic001G264300--Sobic001G261460 Sobic001G265800 Sobic001G265800 Sobic001G264400--Sobic001G265800 Sobic001G264400--Sobic003G321400 Sobic001G264400--Sobic009G221800 Sobic001G264400--Sobic001G264300 Sobic003G269100 Sobic003G269100 Sobic001G264400--Sobic003G269100 Sobic001G099600 Sobic001G099600 Sobic001G264400--Sobic001G099600 Sobic001G264400--Sobic008G077300 Sobic001G264400--Sobic004G170800 Sobic001G264400--Sobic004G156900
Octagon: transcription factors


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