Gene annotation
Transcriptome id Sobic.002G359800.1
Synonym Sb02g038040
Functional annotation GRAS family transcription factor domain containing protein, expressed
UniProt C5XD47
Pfam PF03514
Panther DB PTHR31636 PTHR31636:SF51
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G49950 : GRAS family transcription factor
RAP-DB (Rice) LOC_Os07g40020.1 : GRAS family transcription factor domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048598 , Zm00025a015073
Brachypodium KQK15456
Barley HORVU2Hr1G035120.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G184800 expressed protein -
2 Sobic.001G430000 basic helix-loop-helix, putative, expressed -
3 Sobic.001G038400 expressed protein -
4 Sobic.003G184500 carboxyl-terminal peptidase, putative, expressed -
5 Sobic.010G260600 CAMK_CAMK_like_CG18020d.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
6 Sobic.004G129700 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
7 Sobic.010G036200 expressed protein -
8 Sobic.009G165300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.008G037200 expressed protein -
10 Sobic.001G403200 receptor-like kinase RHG1, putative, expressed -
11 Sobic.007G224800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
12 Sobic.004G025200 expressed protein -
13 Sobic.003G023666 - -
14 Sobic.006G009500 down-regulated TF in developmental senescence(PubMedID : 27586543)@ZOS4-01 - C2H2 zinc finger protein, expressed -
15 Sobic.004G323100 SCP-like extracellular protein, expressed -
16 Sobic.004G300701 - -
17 Sobic.006G186100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@exostosin family domain containing protein, expressed -
18 Sobic.010G241500 phytosulfokine receptor precursor, putative, expressed -
19 Sobic.004G097800 bet v I allergen family protein, putative, expressed K14496: abscisic acid receptor PYR/PYL family
20 Sobic.003G041700 DNA mismatch repair protein MSH6-2, putative, expressed K08737: DNA mismatch repair protein MSH6


Gene co-expression network
sample Sobic002G359800 Sobic002G359800 Sobic002G184800 Sobic002G184800 Sobic002G359800--Sobic002G184800 Sobic001G430000 Sobic001G430000 Sobic002G359800--Sobic001G430000 Sobic001G038400 Sobic001G038400 Sobic002G359800--Sobic001G038400 Sobic003G184500 Sobic003G184500 Sobic002G359800--Sobic003G184500 Sobic010G260600 Sobic010G260600 Sobic002G359800--Sobic010G260600 Sobic004G129700 Sobic004G129700 Sobic002G359800--Sobic004G129700 Sobic010G036200 Sobic010G036200 Sobic002G359800--Sobic010G036200 Sobic009G165300 Sobic009G165300 Sobic002G359800--Sobic009G165300 Sobic008G037200 Sobic008G037200 Sobic002G359800--Sobic008G037200 Sobic002G184800--Sobic002G359800 Sobic002G184800--Sobic001G038400 Sobic002G184800--Sobic001G430000 Sobic002G184800--Sobic010G260600 Sobic002G184800--Sobic003G184500 Sobic002G184800--Sobic009G165300 Sobic001G403200 Sobic001G403200 Sobic002G184800--Sobic001G403200 Sobic002G184800--Sobic004G129700 Sobic002G184800--Sobic010G036200 Sobic007G224800 Sobic007G224800 Sobic001G430000--Sobic007G224800 Sobic001G430000--Sobic002G359800 Sobic001G430000--Sobic010G036200 Sobic001G430000--Sobic002G184800 Sobic001G430000--Sobic003G184500 Sobic001G430000--Sobic008G037200 Sobic003G201300 Sobic003G201300 Sobic001G430000--Sobic003G201300 Sobic003G023666 Sobic003G023666 Sobic001G430000--Sobic003G023666 Sobic008G127200 Sobic008G127200 Sobic001G430000--Sobic008G127200 Sobic001G038400--Sobic010G260600 Sobic001G038400--Sobic002G184800 Sobic001G038400--Sobic002G359800 Sobic001G038400--Sobic008G037200 Sobic001G038400--Sobic009G165300 Sobic001G038400--Sobic001G430000 Sobic001G413700 Sobic001G413700 Sobic001G038400--Sobic001G413700 Sobic005G116300 Sobic005G116300 Sobic001G038400--Sobic005G116300 Sobic004G025200 Sobic004G025200 Sobic001G038400--Sobic004G025200 Sobic003G184500--Sobic001G430000 Sobic001G399400 Sobic001G399400 Sobic003G184500--Sobic001G399400 Sobic008G107600 Sobic008G107600 Sobic003G184500--Sobic008G107600 Sobic006G271100 Sobic006G271100 Sobic003G184500--Sobic006G271100 Sobic003G184500--Sobic002G359800 Sobic003G184500--Sobic002G184800 Sobic003G399400 Sobic003G399400 Sobic003G184500--Sobic003G399400 Sobic002G219500 Sobic002G219500 Sobic003G184500--Sobic002G219500 Sobic003G184500--Sobic003G023666 Sobic010G260600--Sobic001G038400 Sobic010G260600--Sobic009G165300 Sobic010G260600--Sobic005G116300 Sobic002G420200 Sobic002G420200 Sobic010G260600--Sobic002G420200 Sobic010G260600--Sobic002G184800 Sobic006G134001 Sobic006G134001 Sobic010G260600--Sobic006G134001 Sobic010G260600--Sobic001G413700 Sobic010G260600--Sobic002G359800 Sobic010G246200 Sobic010G246200 Sobic010G260600--Sobic010G246200 Sobic004G129700--Sobic002G359800 Sobic004G129700--Sobic002G184800 Sobic004G129700--Sobic001G038400 Sobic004G129700--Sobic009G165300 Sobic004G129700--Sobic010G260600 Sobic004G323100 Sobic004G323100 Sobic004G129700--Sobic004G323100 Sobic004G129700--Sobic001G430000 Sobic004G129700--Sobic010G036200 Sobic004G097800 Sobic004G097800 Sobic004G129700--Sobic004G097800 Sobic010G036200--Sobic007G224800 Sobic010G036200--Sobic001G430000 Sobic008G078600 Sobic008G078600 Sobic010G036200--Sobic008G078600 Sobic010G036200--Sobic003G201300 Sobic010G036200--Sobic001G038400 Sobic010G036200--Sobic002G359800 Sobic009G116766 Sobic009G116766 Sobic010G036200--Sobic009G116766 Sobic010G036200--Sobic008G037200 Sobic010G036200--Sobic008G127200 Sobic009G165300--Sobic002G420200 Sobic009G165300--Sobic006G134001 Sobic009G165300--Sobic010G260600 Sobic009G165300--Sobic001G038400 Sobic009G165300--Sobic004G025200 Sobic009G165300--Sobic002G184800 Sobic003G121500 Sobic003G121500 Sobic009G165300--Sobic003G121500 Sobic009G165300--Sobic002G359800 Sobic003G283500 Sobic003G283500 Sobic009G165300--Sobic003G283500 Sobic008G037200--Sobic001G038400 Sobic008G037200--Sobic001G430000 Sobic008G037200--Sobic004G025200 Sobic008G037200--Sobic007G224800 Sobic008G037200--Sobic003G023666 Sobic008G037200--Sobic001G413700 Sobic008G037200--Sobic010G036200 Sobic008G037200--Sobic002G359800 Sobic008G037200--Sobic003G184500
Octagon: transcription factors


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