Gene annotation
Transcriptome id Sobic.004G129700.1
Synonym Sb04g011240
Functional annotation MATE efflux family protein, putative, expressed
UniProt C5Y072
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF118
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT5G52450 : MATE efflux family protein
RAP-DB (Rice) LOC_Os10g11354.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a019758 , Zm00025a043408 , Zm00025a019761
Brachypodium PNT65259 , KQJ91725 , PNT65260
Barley HORVU7Hr1G047080.3 , HORVU3Hr1G005230.1 , HORVU3Hr1G005230.3 , HORVU3Hr1G005230.2 , HORVU7Hr1G047080.24 , HORVU7Hr1G047080.18 , HORVU7Hr1G047080.19 , HORVU7Hr1G047080.4 , HORVU7Hr1G047080.6 , HORVU7Hr1G047080.7 , HORVU1Hr1G080850.10 , HORVU1Hr1G080850.11 , HORVU1Hr1G080850.8 , HORVU1Hr1G080850.9 , HORVU1Hr1G080850.4 , HORVU1Hr1G080850.5 , HORVU1Hr1G080850.6 , HORVU1Hr1G080850.7 , HORVU1Hr1G080850.1 , HORVU1Hr1G080850.2 , HORVU1Hr1G080850.3 , HORVU7Hr1G047080.12 , HORVU7Hr1G047080.10 , HORVU7Hr1G047080.11 , HORVU7Hr1G047080.17 , HORVU7Hr1G047080.2 , HORVU7Hr1G047080.8 , HORVU7Hr1G047080.23 , HORVU7Hr1G047080.22 , HORVU7Hr1G047080.26 , HORVU7Hr1G047080.25
Wheat TraesCS7A02G033200 , TraesCS1B02G369300 , TraesCS7D02G230900 , TraesCS7D02G230900 , TraesCS7A02G230100 , TraesCS7D02G230800 , TraesCS7B02G196100 , TraesCS7A02G230500 , TraesCS7B02G196000 , TraesCS3B02G027900 , TraesCS1D02G357500 , TraesCSU02G043800 , TraesCS3A02G029100 , TraesCS7A02G230200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G359800 GRAS family transcription factor domain containing protein, expressed -
2 Sobic.002G184800 expressed protein -
3 Sobic.001G038400 expressed protein -
4 Sobic.009G165300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.010G260600 CAMK_CAMK_like_CG18020d.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
6 Sobic.004G323100 SCP-like extracellular protein, expressed -
7 Sobic.001G430000 basic helix-loop-helix, putative, expressed -
8 Sobic.010G036200 expressed protein -
9 Sobic.004G097800 bet v I allergen family protein, putative, expressed K14496: abscisic acid receptor PYR/PYL family
10 Sobic.001G403200 receptor-like kinase RHG1, putative, expressed -
11 Sobic.006G134001 - -
12 Sobic.004G300701 - -
13 Sobic.007G224800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
14 Sobic.010G241500 phytosulfokine receptor precursor, putative, expressed -
15 Sobic.010G246200 ABC transporter, ATP-binding protein, putative, expressed -
16 Sobic.008G145900 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed -
17 Sobic.003G283500 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
18 Sobic.010G139100 serine/threonine-protein kinase, putative, expressed -
19 Sobic.006G135500 glyoxal oxidase-related, putative, expressed -
20 Sobic.008G127200 expressed protein -


Gene co-expression network
sample Sobic004G129700 Sobic004G129700 Sobic002G359800 Sobic002G359800 Sobic004G129700--Sobic002G359800 Sobic002G184800 Sobic002G184800 Sobic004G129700--Sobic002G184800 Sobic001G038400 Sobic001G038400 Sobic004G129700--Sobic001G038400 Sobic009G165300 Sobic009G165300 Sobic004G129700--Sobic009G165300 Sobic010G260600 Sobic010G260600 Sobic004G129700--Sobic010G260600 Sobic004G323100 Sobic004G323100 Sobic004G129700--Sobic004G323100 Sobic001G430000 Sobic001G430000 Sobic004G129700--Sobic001G430000 Sobic010G036200 Sobic010G036200 Sobic004G129700--Sobic010G036200 Sobic004G097800 Sobic004G097800 Sobic004G129700--Sobic004G097800 Sobic002G359800--Sobic002G184800 Sobic002G359800--Sobic001G430000 Sobic002G359800--Sobic001G038400 Sobic003G184500 Sobic003G184500 Sobic002G359800--Sobic003G184500 Sobic002G359800--Sobic010G260600 Sobic002G359800--Sobic004G129700 Sobic002G359800--Sobic010G036200 Sobic002G359800--Sobic009G165300 Sobic008G037200 Sobic008G037200 Sobic002G359800--Sobic008G037200 Sobic002G184800--Sobic002G359800 Sobic002G184800--Sobic001G038400 Sobic002G184800--Sobic001G430000 Sobic002G184800--Sobic010G260600 Sobic002G184800--Sobic003G184500 Sobic002G184800--Sobic009G165300 Sobic001G403200 Sobic001G403200 Sobic002G184800--Sobic001G403200 Sobic002G184800--Sobic004G129700 Sobic002G184800--Sobic010G036200 Sobic001G038400--Sobic010G260600 Sobic001G038400--Sobic002G184800 Sobic001G038400--Sobic002G359800 Sobic001G038400--Sobic008G037200 Sobic001G038400--Sobic009G165300 Sobic001G038400--Sobic001G430000 Sobic001G413700 Sobic001G413700 Sobic001G038400--Sobic001G413700 Sobic005G116300 Sobic005G116300 Sobic001G038400--Sobic005G116300 Sobic004G025200 Sobic004G025200 Sobic001G038400--Sobic004G025200 Sobic002G420200 Sobic002G420200 Sobic009G165300--Sobic002G420200 Sobic006G134001 Sobic006G134001 Sobic009G165300--Sobic006G134001 Sobic009G165300--Sobic010G260600 Sobic009G165300--Sobic001G038400 Sobic009G165300--Sobic004G025200 Sobic009G165300--Sobic002G184800 Sobic003G121500 Sobic003G121500 Sobic009G165300--Sobic003G121500 Sobic009G165300--Sobic002G359800 Sobic003G283500 Sobic003G283500 Sobic009G165300--Sobic003G283500 Sobic010G260600--Sobic001G038400 Sobic010G260600--Sobic009G165300 Sobic010G260600--Sobic005G116300 Sobic010G260600--Sobic002G420200 Sobic010G260600--Sobic002G184800 Sobic010G260600--Sobic006G134001 Sobic010G260600--Sobic001G413700 Sobic010G260600--Sobic002G359800 Sobic010G246200 Sobic010G246200 Sobic010G260600--Sobic010G246200 Sobic004G323100--Sobic001G403200 Sobic004G077100 Sobic004G077100 Sobic004G323100--Sobic004G077100 Sobic004G323100--Sobic004G025200 Sobic008G107600 Sobic008G107600 Sobic004G323100--Sobic008G107600 Sobic003G151900 Sobic003G151900 Sobic004G323100--Sobic003G151900 Sobic004G323100--Sobic004G129700 Sobic004G323100--Sobic001G038400 Sobic003G041700 Sobic003G041700 Sobic004G323100--Sobic003G041700 Sobic004G323100--Sobic003G184500 Sobic007G224800 Sobic007G224800 Sobic001G430000--Sobic007G224800 Sobic001G430000--Sobic002G359800 Sobic001G430000--Sobic010G036200 Sobic001G430000--Sobic002G184800 Sobic001G430000--Sobic003G184500 Sobic001G430000--Sobic008G037200 Sobic003G201300 Sobic003G201300 Sobic001G430000--Sobic003G201300 Sobic003G023666 Sobic003G023666 Sobic001G430000--Sobic003G023666 Sobic008G127200 Sobic008G127200 Sobic001G430000--Sobic008G127200 Sobic010G036200--Sobic007G224800 Sobic010G036200--Sobic001G430000 Sobic008G078600 Sobic008G078600 Sobic010G036200--Sobic008G078600 Sobic010G036200--Sobic003G201300 Sobic010G036200--Sobic001G038400 Sobic010G036200--Sobic002G359800 Sobic009G116766 Sobic009G116766 Sobic010G036200--Sobic009G116766 Sobic010G036200--Sobic008G037200 Sobic010G036200--Sobic008G127200 Sobic004G097800--Sobic007G224800 Sobic004G097800--Sobic010G036200 Sobic004G097800--Sobic001G430000 Sobic004G097800--Sobic003G201300 Sobic004G097800--Sobic009G116766 Sobic004G300701 Sobic004G300701 Sobic004G097800--Sobic004G300701 Sobic004G097800--Sobic001G038400 Sobic004G097800--Sobic002G359800 Sobic004G097800--Sobic008G078600
Octagon: transcription factors


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