Gene annotation
| Transcriptome id | Sobic.010G260600.1 |
|---|---|
| Synonym | CPK2, ATCPK2, Sb10g029700 |
| Functional annotation | CAMK_CAMK_like_CG18020d.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed |
| UniProt | C5Z9E7 |
| Pfam | PF13499 PF00069 |
| Panther DB | PTHR24349 PTHR24349:SF88 |
| NCBI CDD | KOG0032; Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily |
| KEGG Orthology | - |
| Gene Ontology | GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity |
Orthologs (automatic annotation)
| TAIR | AT3G10660 : calmodulin-domain protein kinase cdpk isoform 2 |
|---|---|
| RAP-DB (Rice) | LOC_Os05g41090.1 : CAMK_CAMK_like_CG18020d.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed |
| MaizeGDB (Corn) | Zm00025a045889 , Zm00025a033877 |
| Brachypodium | KQK05675 |
| Barley | HORVU0Hr1G023280.31 , HORVU0Hr1G023280.30 , HORVU0Hr1G023280.33 , HORVU0Hr1G023280.32 , HORVU0Hr1G023280.22 , HORVU0Hr1G023280.23 , HORVU0Hr1G023280.20 , HORVU0Hr1G023280.21 , HORVU0Hr1G023280.26 , HORVU0Hr1G023280.27 , HORVU0Hr1G023280.24 , HORVU0Hr1G023280.25 , HORVU0Hr1G023280.28 , HORVU0Hr1G023280.29 , HORVU1Hr1G068660.1 , HORVU1Hr1G068660.3 , HORVU1Hr1G068660.2 , HORVU0Hr1G023280.19 , HORVU0Hr1G023280.18 , HORVU0Hr1G023280.13 , HORVU0Hr1G023280.12 , HORVU0Hr1G023280.17 , HORVU0Hr1G023280.16 , HORVU0Hr1G023280.15 , HORVU0Hr1G023280.14 |
| Wheat | TraesCS1B02G318000 , TraesCS1A02G307200 , TraesCS1D02G306600 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G038400 | expressed protein | - |
| 2 | Sobic.009G165300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 3 | Sobic.005G116300 | similar to Expressed protein(PubMedID : 24655390)@similar to Expressed protein(PubMedID : 24655390)@expressed protein | - |
| 4 | Sobic.002G420200 | proline-rich protein, putative, expressed | - |
| 5 | Sobic.002G184800 | expressed protein | - |
| 6 | Sobic.006G134001 | - | - |
| 7 | Sobic.001G413700 | white-brown complex homolog protein, putative, expressed | - |
| 8 | Sobic.002G359800 | GRAS family transcription factor domain containing protein, expressed | - |
| 9 | Sobic.010G246200 | ABC transporter, ATP-binding protein, putative, expressed | - |
| 10 | Sobic.001G403200 | receptor-like kinase RHG1, putative, expressed | - |
| 11 | Sobic.002G146000 | "Localized in cytoplasm, involved in the process of drought defense"(PubMedID : 27231650)@dehydrogenase, putative, expressed | K09753: cinnamoyl-CoA reductase |
| 12 | Sobic.007G037600 | C4-dicarboxylate transporter/malic acid transport protein, expressed | - |
| 13 | Sobic.004G106100 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 14 | Sobic.006G092700 | MLO domain containing protein, putative, expressed | K08472: mlo protein |
| 15 | Sobic.006G031100 | CAP (Cysteine-rich secretory proteins("PubMedID : 26759170,PubMedID : 24597475")@SCP-like extracellular protein, expressed | - |
| 16 | Sobic.003G353200 | similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Laccase 2 LAC2 (Os)(PubMedID : 27208977)@laccase precursor protein, putative, expressed | K05909: laccase |
| 17 | Sobic.006G205700 | glycosyl hydrolases family 16, putative, expressed | - |
| 18 | Sobic.003G441800 | RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed | - |
| 19 | Sobic.006G003600 | transporter family protein, putative, expressed | - |
| 20 | Sobic.010G028100 | GDP-mannose 4,6 dehydratase 2, putative, expressed | K01711: gmd, GDPmannose 4,6-dehydratase |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
