Gene annotation
Transcriptome id Sobic.001G131300.1,Sobic.001G131300.2,Sobic.001G131300.3
Synonym Sb01g011510
Functional annotation centromere protein, putative, expressed
UniProt C5WPH9 , A0A1B6QIR2
Pfam -
Panther DB PTHR18937 PTHR18937:SF238
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G38070 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os03g48490.1 : centromere protein, putative, expressed
MaizeGDB (Corn) Zm00025a007664 , Zm00025a017086
Brachypodium KQK13725
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G035600 Kinesin motor domain domain containing protein, expressed K10400: kinesin family member 15
2 Sobic.001G177900 Kinesin motor domain domain containing protein, expressed K10400: kinesin family member 15
3 Sobic.005G000500 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
4 Sobic.003G118100 EMB3013, putative, expressed K17545: serine/threonine-protein kinase ULK4
5 Sobic.010G008900 kinesin motor domain containing protein, expressed K11498: centromeric protein E
6 Sobic.007G168900 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
7 Sobic.006G179200 cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
8 Sobic.005G144600 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
9 Sobic.003G314900 flap endonuclease, putative, expressed K10746: exonuclease 1
10 Sobic.003G294500 dynamin family protein, putative, expressed -
11 Sobic.008G148000 kinesin motor domain containing protein, putative, expressed K10400: kinesin family member 15
12 Sobic.001G170800 "Transport protein(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659835)@transport protein-related, putative, expressed -
13 Sobic.001G075400 expressed protein -
14 Sobic.001G029800 expressed protein -
15 Sobic.004G271300 DNA topoisomerase 2, putative, expressed K03164: DNA topoisomerase II
16 Sobic.002G191000 STE_MEKK_ste11_MAP3K.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
17 Sobic.010G017400 DLT(Ortholog in rice:Tong et al. (2012))(PubMedID : 31659927)@DELLA protein SLR1, putative, expressed -
18 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
19 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
20 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2


Gene co-expression network
sample Sobic001G131300 Sobic001G131300 Sobic006G035600 Sobic006G035600 Sobic001G131300--Sobic006G035600 Sobic001G177900 Sobic001G177900 Sobic001G131300--Sobic001G177900 Sobic005G000500 Sobic005G000500 Sobic001G131300--Sobic005G000500 Sobic003G118100 Sobic003G118100 Sobic001G131300--Sobic003G118100 Sobic010G008900 Sobic010G008900 Sobic001G131300--Sobic010G008900 Sobic007G168900 Sobic007G168900 Sobic001G131300--Sobic007G168900 Sobic006G179200 Sobic006G179200 Sobic001G131300--Sobic006G179200 Sobic005G144600 Sobic005G144600 Sobic001G131300--Sobic005G144600 Sobic003G314900 Sobic003G314900 Sobic001G131300--Sobic003G314900 Sobic006G035600--Sobic003G118100 Sobic006G035600--Sobic001G131300 Sobic002G191000 Sobic002G191000 Sobic006G035600--Sobic002G191000 Sobic009G181500 Sobic009G181500 Sobic006G035600--Sobic009G181500 Sobic006G035600--Sobic010G008900 Sobic006G035600--Sobic005G000500 Sobic003G294500 Sobic003G294500 Sobic006G035600--Sobic003G294500 Sobic010G051100 Sobic010G051100 Sobic006G035600--Sobic010G051100 Sobic008G148000 Sobic008G148000 Sobic006G035600--Sobic008G148000 Sobic001G177900--Sobic007G168900 Sobic001G177900--Sobic003G314900 Sobic001G177900--Sobic005G000500 Sobic003G260700 Sobic003G260700 Sobic001G177900--Sobic003G260700 Sobic001G170800 Sobic001G170800 Sobic001G177900--Sobic001G170800 Sobic001G177900--Sobic010G008900 Sobic004G339500 Sobic004G339500 Sobic001G177900--Sobic004G339500 Sobic001G177900--Sobic005G144600 Sobic001G177900--Sobic003G294500 Sobic005G000500--Sobic007G168900 Sobic005G000500--Sobic001G170800 Sobic005G000500--Sobic008G148000 Sobic003G444100 Sobic003G444100 Sobic005G000500--Sobic003G444100 Sobic005G000500--Sobic003G314900 Sobic004G271300 Sobic004G271300 Sobic005G000500--Sobic004G271300 Sobic005G000500--Sobic005G144600 Sobic005G000500--Sobic010G008900 Sobic005G000500--Sobic001G177900 Sobic003G118100--Sobic006G035600 Sobic003G118100--Sobic002G191000 Sobic003G118100--Sobic010G008900 Sobic003G118100--Sobic008G148000 Sobic003G118100--Sobic005G000500 Sobic007G125300 Sobic007G125300 Sobic003G118100--Sobic007G125300 Sobic003G118100--Sobic001G131300 Sobic003G118100--Sobic003G294500 Sobic001G029800 Sobic001G029800 Sobic003G118100--Sobic001G029800 Sobic010G008900--Sobic005G000500 Sobic010G008900--Sobic003G314900 Sobic010G008900--Sobic001G170800 Sobic010G008900--Sobic007G168900 Sobic010G008900--Sobic001G029800 Sobic010G008900--Sobic001G177900 Sobic010G008900--Sobic003G294500 Sobic010G008900--Sobic004G271300 Sobic010G008900--Sobic008G148000 Sobic007G168900--Sobic005G000500 Sobic007G168900--Sobic005G144600 Sobic007G168900--Sobic004G271300 Sobic007G168900--Sobic001G177900 Sobic007G168900--Sobic003G314900 Sobic007G168900--Sobic003G294500 Sobic007G168900--Sobic003G260700 Sobic007G168900--Sobic010G008900 Sobic010G147700 Sobic010G147700 Sobic007G168900--Sobic010G147700 Sobic004G053900 Sobic004G053900 Sobic006G179200--Sobic004G053900 Sobic010G105400 Sobic010G105400 Sobic006G179200--Sobic010G105400 Sobic006G179200--Sobic008G148000 Sobic002G113400 Sobic002G113400 Sobic006G179200--Sobic002G113400 Sobic006G179200--Sobic006G035600 Sobic006G179200--Sobic001G131300 Sobic006G179200--Sobic001G170800 Sobic006G179200--Sobic007G125300 Sobic006G179200--Sobic005G000500 Sobic005G144600--Sobic007G168900 Sobic005G144600--Sobic010G105400 Sobic005G144600--Sobic003G294500 Sobic005G144600--Sobic005G000500 Sobic005G144600--Sobic003G314900 Sobic005G144600--Sobic001G177900 Sobic004G047100 Sobic004G047100 Sobic005G144600--Sobic004G047100 Sobic005G144600--Sobic004G271300 Sobic003G179500 Sobic003G179500 Sobic005G144600--Sobic003G179500 Sobic003G314900--Sobic005G000500 Sobic003G314900--Sobic007G168900 Sobic003G314900--Sobic001G177900 Sobic003G314900--Sobic010G008900 Sobic003G314900--Sobic005G144600 Sobic003G314900--Sobic003G294500 Sobic003G314900--Sobic003G260700 Sobic003G314900--Sobic001G170800 Sobic003G314900--Sobic004G271300
Octagon: transcription factors


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