Gene annotation
Transcriptome id Sobic.002G020500.5,Sobic.002G020500.6,Sobic.002G020500.3,Sobic.002G020500.4
Synonym Sb02g001900
Functional annotation ternary complex factor MIP1, putative, expressed
UniProt A0A1B6Q8R1 , A0A1B6Q8R5
Pfam PF04784 PF14389 PF14389 PF04784
Panther DB PTHR23054 PTHR23054:SF28 PTHR23054:SF28 PTHR23054
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G66600 : Protein of unknown function, DUF547
RAP-DB (Rice) LOC_Os07g03140.1 : ternary complex factor MIP1, putative, expressed
MaizeGDB (Corn) Zm00025a044942 , Zm00025a016701
Brachypodium -
Barley -
Wheat TraesCS2D02G257500 , TraesCS2D02G257500 , TraesCS2D02G257500 , TraesCS2D02G257500 , TraesCS2B02G275800 , TraesCS2B02G275800 , TraesCS2B02G275800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G403200 receptor-like kinase RHG1, putative, expressed -
2 Sobic.010G104400 cysteine-rich repeat secretory protein precursor, putative, expressed -
3 Sobic.004G271500 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
4 Sobic.008G014700 domain of unknown function, DUF250 domain containing protein, expressed -
5 Sobic.003G255600 expressed protein -
6 Sobic.010G260600 CAMK_CAMK_like_CG18020d.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
7 Sobic.006G009500 down-regulated TF in developmental senescence(PubMedID : 27586543)@ZOS4-01 - C2H2 zinc finger protein, expressed -
8 Sobic.001G272600 powdery mildew resistance protein PM3b, putative, expressed -
9 Sobic.009G079900 endoglucanase precursor, putative, expressed -
10 Sobic.003G296500 leucine rich repeat family protein, putative, expressed -
11 Sobic.010G176800 ABC transporter, ATP-binding protein, putative, expressed -
12 Sobic.001G301900 ZOS10-07 - C2H2 zinc finger protein, expressed -
13 Sobic.001G413700 white-brown complex homolog protein, putative, expressed -
14 Sobic.003G041700 DNA mismatch repair protein MSH6-2, putative, expressed K08737: DNA mismatch repair protein MSH6
15 Sobic.009G106500 PMR5, putative, expressed -
16 Sobic.009G095800 DUF623 domain containing protein, expressed -
17 Sobic.003G152000 peroxidase precursor, putative, expressed K00430: peroxidase
18 Sobic.002G029500 cytochrome P450 84A1, putative, expressed K09755: CYP84A, ferulate-5-hydroxylase
19 Sobic.001G144200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF581 domain containing protein, expressed -
20 Sobic.003G083600 DNA binding protein, putative, expressed -


Gene co-expression network
sample Sobic002G020500 Sobic002G020500 Sobic001G403200 Sobic001G403200 Sobic002G020500--Sobic001G403200 Sobic010G104400 Sobic010G104400 Sobic002G020500--Sobic010G104400 Sobic004G271500 Sobic004G271500 Sobic002G020500--Sobic004G271500 Sobic008G014700 Sobic008G014700 Sobic002G020500--Sobic008G014700 Sobic003G255600 Sobic003G255600 Sobic002G020500--Sobic003G255600 Sobic010G260600 Sobic010G260600 Sobic002G020500--Sobic010G260600 Sobic006G009500 Sobic006G009500 Sobic002G020500--Sobic006G009500 Sobic001G272600 Sobic001G272600 Sobic002G020500--Sobic001G272600 Sobic009G079900 Sobic009G079900 Sobic002G020500--Sobic009G079900 Sobic001G403200--Sobic002G020500 Sobic001G403200--Sobic004G271500 Sobic003G041700 Sobic003G041700 Sobic001G403200--Sobic003G041700 Sobic001G403200--Sobic010G104400 Sobic008G113800 Sobic008G113800 Sobic001G403200--Sobic008G113800 Sobic003G151900 Sobic003G151900 Sobic001G403200--Sobic003G151900 Sobic001G314000 Sobic001G314000 Sobic001G403200--Sobic001G314000 Sobic001G038400 Sobic001G038400 Sobic001G403200--Sobic001G038400 Sobic001G403200--Sobic006G009500 Sobic002G016400 Sobic002G016400 Sobic010G104400--Sobic002G016400 Sobic003G296500 Sobic003G296500 Sobic010G104400--Sobic003G296500 Sobic006G149300 Sobic006G149300 Sobic010G104400--Sobic006G149300 Sobic007G208100 Sobic007G208100 Sobic010G104400--Sobic007G208100 Sobic001G177900 Sobic001G177900 Sobic010G104400--Sobic001G177900 Sobic010G104400--Sobic002G020500 Sobic004G233700 Sobic004G233700 Sobic010G104400--Sobic004G233700 Sobic010G104400--Sobic001G403200 Sobic004G287700 Sobic004G287700 Sobic010G104400--Sobic004G287700 Sobic004G271500--Sobic001G403200 Sobic002G191000 Sobic002G191000 Sobic004G271500--Sobic002G191000 Sobic010G176800 Sobic010G176800 Sobic004G271500--Sobic010G176800 Sobic001G029800 Sobic001G029800 Sobic004G271500--Sobic001G029800 Sobic004G271500--Sobic009G079900 Sobic002G158900 Sobic002G158900 Sobic004G271500--Sobic002G158900 Sobic004G271500--Sobic001G314000 Sobic004G271500--Sobic002G020500 Sobic001G144200 Sobic001G144200 Sobic004G271500--Sobic001G144200 Sobic010G242800 Sobic010G242800 Sobic008G014700--Sobic010G242800 Sobic002G029500 Sobic002G029500 Sobic008G014700--Sobic002G029500 Sobic005G110511 Sobic005G110511 Sobic008G014700--Sobic005G110511 Sobic007G064900 Sobic007G064900 Sobic008G014700--Sobic007G064900 Sobic001G293100 Sobic001G293100 Sobic008G014700--Sobic001G293100 Sobic005G182900 Sobic005G182900 Sobic008G014700--Sobic005G182900 Sobic005G097900 Sobic005G097900 Sobic008G014700--Sobic005G097900 Sobic008G033100 Sobic008G033100 Sobic008G014700--Sobic008G033100 Sobic007G015000 Sobic007G015000 Sobic008G014700--Sobic007G015000 Sobic009G106500 Sobic009G106500 Sobic003G255600--Sobic009G106500 Sobic001G342000 Sobic001G342000 Sobic003G255600--Sobic001G342000 Sobic003G255600--Sobic001G293100 Sobic003G255600--Sobic005G182900 Sobic006G097900 Sobic006G097900 Sobic003G255600--Sobic006G097900 Sobic004G014600 Sobic004G014600 Sobic003G255600--Sobic004G014600 Sobic006G171100 Sobic006G171100 Sobic003G255600--Sobic006G171100 Sobic003G255600--Sobic002G029500 Sobic003G255600--Sobic008G033100 Sobic010G260600--Sobic001G038400 Sobic009G165300 Sobic009G165300 Sobic010G260600--Sobic009G165300 Sobic005G116300 Sobic005G116300 Sobic010G260600--Sobic005G116300 Sobic002G420200 Sobic002G420200 Sobic010G260600--Sobic002G420200 Sobic002G184800 Sobic002G184800 Sobic010G260600--Sobic002G184800 Sobic006G134001 Sobic006G134001 Sobic010G260600--Sobic006G134001 Sobic001G413700 Sobic001G413700 Sobic010G260600--Sobic001G413700 Sobic002G359800 Sobic002G359800 Sobic010G260600--Sobic002G359800 Sobic010G246200 Sobic010G246200 Sobic010G260600--Sobic010G246200 Sobic010G220300 Sobic010G220300 Sobic006G009500--Sobic010G220300 Sobic003G052100 Sobic003G052100 Sobic006G009500--Sobic003G052100 Sobic001G402400 Sobic001G402400 Sobic006G009500--Sobic001G402400 Sobic006G108300 Sobic006G108300 Sobic006G009500--Sobic006G108300 Sobic004G312500 Sobic004G312500 Sobic006G009500--Sobic004G312500 Sobic007G041600 Sobic007G041600 Sobic006G009500--Sobic007G041600 Sobic005G107500 Sobic005G107500 Sobic006G009500--Sobic005G107500 Sobic007G020700 Sobic007G020700 Sobic006G009500--Sobic007G020700 Sobic002G411000 Sobic002G411000 Sobic006G009500--Sobic002G411000 Sobic001G272600--Sobic010G242800 Sobic001G272600--Sobic008G033100 Sobic001G272600--Sobic005G182900 Sobic003G161400 Sobic003G161400 Sobic001G272600--Sobic003G161400 Sobic010G213600 Sobic010G213600 Sobic001G272600--Sobic010G213600 Sobic005G065700 Sobic005G065700 Sobic001G272600--Sobic005G065700 Sobic002G019000 Sobic002G019000 Sobic001G272600--Sobic002G019000 Sobic001G272600--Sobic005G110511 Sobic001G272600--Sobic001G293100 Sobic009G060700 Sobic009G060700 Sobic009G079900--Sobic009G060700 Sobic009G079900--Sobic007G020700 Sobic005G052700 Sobic005G052700 Sobic009G079900--Sobic005G052700 Sobic002G029600 Sobic002G029600 Sobic009G079900--Sobic002G029600 Sobic003G079100 Sobic003G079100 Sobic009G079900--Sobic003G079100 Sobic009G079900--Sobic010G213600 Sobic004G008600 Sobic004G008600 Sobic009G079900--Sobic004G008600 Sobic001G274400 Sobic001G274400 Sobic009G079900--Sobic001G274400 Sobic006G009700 Sobic006G009700 Sobic009G079900--Sobic006G009700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.