Gene annotation
| Transcriptome id | Sobic.010G176800.2,Sobic.010G176800.1 |
|---|---|
| Synonym | ATH6, ATATH6, Sb10g022870 |
| Functional annotation | ABC transporter, ATP-binding protein, putative, expressed |
| UniProt | A0A1W0VTM3 , C5Z565 |
| Pfam | PF00005 PF12698 PF12698 PF00005 |
| Panther DB | PTHR19229 PTHR19229:SF123 |
| NCBI CDD | KOG0059; Lipid exporter ABCA1 and related proteins, ABC superfamily |
| KEGG Orthology | - |
| Gene Ontology | GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport GO:0005215transporter activity |
Orthologs (automatic annotation)
| TAIR | AT3G47740 : ABC2 homolog 2 |
|---|---|
| RAP-DB (Rice) | LOC_Os06g38950.1 : ABC transporter, ATP-binding protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a042271 |
| Brachypodium | KQK17863 , KQK17864 |
| Barley | HORVU4Hr1G039510.1 , HORVU7Hr1G085680.8 , HORVU7Hr1G085680.9 , HORVU7Hr1G085680.4 , HORVU7Hr1G085680.5 , HORVU7Hr1G085680.7 , HORVU7Hr1G085680.1 , HORVU7Hr1G085680.2 , HORVU7Hr1G085680.3 , HORVU3Hr1G030470.1 , HORVU6Hr1G043820.1 , HORVU7Hr1G085680.27 , HORVU7Hr1G085680.26 , HORVU7Hr1G085680.25 , HORVU7Hr1G085680.24 , HORVU7Hr1G085680.23 , HORVU7Hr1G085680.21 , HORVU7Hr1G085680.20 , HORVU7Hr1G085680.29 , HORVU7Hr1G085680.28 , HORVU7Hr1G085680.30 , HORVU7Hr1G085680.31 , HORVU7Hr1G085680.32 , HORVU7Hr1G085680.18 , HORVU7Hr1G085680.19 , HORVU7Hr1G085680.16 , HORVU7Hr1G085680.17 , HORVU7Hr1G085680.14 , HORVU7Hr1G085680.15 , HORVU7Hr1G085680.12 , HORVU7Hr1G085680.13 , HORVU7Hr1G085680.10 , HORVU7Hr1G085680.11 |
| Wheat | TraesCS7A02G367700 , TraesCS7D02G355100 , TraesCS7B02G260800 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G079900 | endoglucanase precursor, putative, expressed | - |
| 2 | Sobic.004G008600 | receptor protein kinase CLAVATA1 precursor, putative, expressed | - |
| 3 | Sobic.001G272600 | powdery mildew resistance protein PM3b, putative, expressed | - |
| 4 | Sobic.001G506100 | Leucine-rich repeat transmembrane protein kinase("PubMedID : 26759170,PubMedID : 24597475")@receptor-like protein kinase 2 precursor, putative, expressed | - |
| 5 | Sobic.005G134200 | "domain confirmed by Pfam database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsGH3.13 - Probable indole-3-acetic acid-amido synthetase, expressed | K14487: auxin responsive GH3 gene family |
| 6 | Sobic.010G269000 | bZIP transcription factor domain containing protein, expressed | - |
| 7 | Sobic.007G220400 | receptor-like protein kinase 2 precursor, putative, expressed | - |
| 8 | Sobic.009G060700 | receptor-like protein kinase 2 precursor, putative, expressed | - |
| 9 | Sobic.004G271500 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein | - |
| 10 | Sobic.010G152300 | glycosyltransferase, putative, expressed | - |
| 11 | Sobic.005G216500 | plant protein of unknown function domain containing protein, expressed | - |
| 12 | Sobic.005G226400 | RGH1A, putative, expressed | - |
| 13 | Sobic.005G226350 | - | - |
| 14 | Sobic.004G080300 | -(PubMedID : 23108465)@MONOCULM 1, putative, expressed | - |
| 15 | Sobic.003G046700 | expressed protein | - |
| 16 | Sobic.010G213600 | histidine kinase, putative, expressed | - |
| 17 | Sobic.010G191700 | cytochrome P450, putative, expressed | - |
| 18 | Sobic.001G522200 | - | - |
| 19 | Sobic.005G223700 | RGH1A, putative, expressed | - |
| 20 | Sobic.010G241900 | Leucine-rich receptor-like protein kinase family protein(PubMedID : 28640841)@serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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