Gene annotation
Transcriptome id Sobic.002G255500.1,Sobic.002G255500.2,Sobic.002G255500.3
Synonym Sb02g029070
Functional annotation expressed protein
UniProt A0A1B6QDH7 , A0A1W0W5W2 , A0A1B6QDH1
Pfam -
Panther DB PTHR35746 PTHR35746:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G14200 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os09g32540.1 : expressed protein
MaizeGDB (Corn) Zm00025a014288 , Zm00025a014283 , Zm00025a014278 , Zm00025a047547
Brachypodium KQJ99077
Barley HORVU5Hr1G075470.2 , HORVU5Hr1G075470.3 , HORVU5Hr1G075470.1 , HORVU5Hr1G075470.4
Wheat TraesCS5D02G286600 , TraesCS5A02G279600 , TraesCS5A02G279600 , TraesCS5B02G278900 , TraesCS5B02G278900 , TraesCS5B02G278900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G170800 "Transport protein(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659835)@transport protein-related, putative, expressed -
2 Sobic.010G008900 kinesin motor domain containing protein, expressed K11498: centromeric protein E
3 Sobic.001G416000 kinesin-related protein, putative, expressed K10398: KIF11, kinesin family member 11
4 Sobic.004G257600 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
5 Sobic.003G314900 flap endonuclease, putative, expressed K10746: exonuclease 1
6 Sobic.001G398400 expressed protein -
7 Sobic.001G177900 Kinesin motor domain domain containing protein, expressed K10400: kinesin family member 15
8 Sobic.003G260700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
9 Sobic.005G000500 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
10 Sobic.007G100600 plastocyanin-like domain containing protein, putative, expressed -
11 Sobic.004G198100 expressed protein -
12 Sobic.009G184200 RecF/RecN/SMC N terminal domain containing protein, expressed K06675: structural maintenance of chromosome 4
13 Sobic.005G144600 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
14 Sobic.010G003100 monocopper oxidase, putative, expressed -
15 Sobic.010G017400 DLT(Ortholog in rice:Tong et al. (2012))(PubMedID : 31659927)@DELLA protein SLR1, putative, expressed -
16 Sobic.001G142000 deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed K01520: dut, dUTP pyrophosphatase
17 Sobic.007G168900 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
18 Sobic.004G271300 DNA topoisomerase 2, putative, expressed K03164: DNA topoisomerase II
19 Sobic.003G444100 "OsCCS52B(Ortholog in rice:Su’udi et al., 2012)"(PubMedID : 31659875)@WD repeat-containing protein, putative, expressed K03364: cell division cycle 20-like protein 1, cofactor of APC complex
20 Sobic.004G339500 kinesin motor domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G255500 Sobic002G255500 Sobic001G170800 Sobic001G170800 Sobic002G255500--Sobic001G170800 Sobic010G008900 Sobic010G008900 Sobic002G255500--Sobic010G008900 Sobic001G416000 Sobic001G416000 Sobic002G255500--Sobic001G416000 Sobic004G257600 Sobic004G257600 Sobic002G255500--Sobic004G257600 Sobic003G314900 Sobic003G314900 Sobic002G255500--Sobic003G314900 Sobic001G398400 Sobic001G398400 Sobic002G255500--Sobic001G398400 Sobic001G177900 Sobic001G177900 Sobic002G255500--Sobic001G177900 Sobic003G260700 Sobic003G260700 Sobic002G255500--Sobic003G260700 Sobic005G000500 Sobic005G000500 Sobic002G255500--Sobic005G000500 Sobic001G170800--Sobic005G000500 Sobic001G170800--Sobic003G260700 Sobic003G444100 Sobic003G444100 Sobic001G170800--Sobic003G444100 Sobic001G170800--Sobic001G398400 Sobic004G271300 Sobic004G271300 Sobic001G170800--Sobic004G271300 Sobic008G148000 Sobic008G148000 Sobic001G170800--Sobic008G148000 Sobic001G170800--Sobic010G008900 Sobic001G170800--Sobic001G177900 Sobic004G339500 Sobic004G339500 Sobic001G170800--Sobic004G339500 Sobic010G008900--Sobic005G000500 Sobic010G008900--Sobic003G314900 Sobic010G008900--Sobic001G170800 Sobic007G168900 Sobic007G168900 Sobic010G008900--Sobic007G168900 Sobic001G029800 Sobic001G029800 Sobic010G008900--Sobic001G029800 Sobic010G008900--Sobic001G177900 Sobic003G294500 Sobic003G294500 Sobic010G008900--Sobic003G294500 Sobic010G008900--Sobic004G271300 Sobic010G008900--Sobic008G148000 Sobic001G416000--Sobic002G255500 Sobic001G416000--Sobic003G314900 Sobic001G416000--Sobic010G008900 Sobic001G416000--Sobic005G000500 Sobic001G416000--Sobic008G148000 Sobic001G416000--Sobic001G170800 Sobic001G416000--Sobic007G168900 Sobic001G416000--Sobic004G271300 Sobic005G144600 Sobic005G144600 Sobic001G416000--Sobic005G144600 Sobic004G257600--Sobic003G260700 Sobic003G387700 Sobic003G387700 Sobic004G257600--Sobic003G387700 Sobic004G257600--Sobic001G398400 Sobic004G257600--Sobic001G177900 Sobic004G198100 Sobic004G198100 Sobic004G257600--Sobic004G198100 Sobic004G257600--Sobic001G170800 Sobic004G257600--Sobic003G444100 Sobic004G257600--Sobic007G168900 Sobic004G257600--Sobic004G339500 Sobic003G314900--Sobic005G000500 Sobic003G314900--Sobic007G168900 Sobic003G314900--Sobic001G177900 Sobic003G314900--Sobic010G008900 Sobic003G314900--Sobic005G144600 Sobic003G314900--Sobic003G294500 Sobic003G314900--Sobic003G260700 Sobic003G314900--Sobic001G170800 Sobic003G314900--Sobic004G271300 Sobic001G398400--Sobic003G260700 Sobic001G398400--Sobic001G170800 Sobic008G006800 Sobic008G006800 Sobic001G398400--Sobic008G006800 Sobic009G184200 Sobic009G184200 Sobic001G398400--Sobic009G184200 Sobic001G398400--Sobic004G271300 Sobic005G005700 Sobic005G005700 Sobic001G398400--Sobic005G005700 Sobic010G105400 Sobic010G105400 Sobic001G398400--Sobic010G105400 Sobic001G398400--Sobic004G198100 Sobic001G398400--Sobic004G257600 Sobic001G177900--Sobic007G168900 Sobic001G177900--Sobic003G314900 Sobic001G177900--Sobic005G000500 Sobic001G177900--Sobic003G260700 Sobic001G177900--Sobic001G170800 Sobic001G177900--Sobic010G008900 Sobic001G177900--Sobic004G339500 Sobic001G177900--Sobic005G144600 Sobic001G177900--Sobic003G294500 Sobic003G260700--Sobic001G170800 Sobic003G260700--Sobic004G257600 Sobic003G260700--Sobic004G339500 Sobic003G260700--Sobic001G398400 Sobic003G260700--Sobic004G198100 Sobic003G260700--Sobic004G271300 Sobic003G260700--Sobic008G006800 Sobic003G260700--Sobic001G177900 Sobic002G313000 Sobic002G313000 Sobic003G260700--Sobic002G313000 Sobic005G000500--Sobic007G168900 Sobic005G000500--Sobic001G170800 Sobic005G000500--Sobic008G148000 Sobic005G000500--Sobic003G444100 Sobic005G000500--Sobic003G314900 Sobic005G000500--Sobic004G271300 Sobic005G000500--Sobic005G144600 Sobic005G000500--Sobic010G008900 Sobic005G000500--Sobic001G177900
Octagon: transcription factors


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