Gene annotation
Transcriptome id Sobic.003G354232.1,Sobic.003G354232.3,Sobic.003G354232.2
Synonym -
Functional annotation -
UniProt A0A1W0W0F7 , A0A1W0W0E0
Pfam -
Panther DB PTHR12271 PTHR12271:SF40
NCBI CDD KOG2277; S-M checkpoint control protein CID1 and related nucleotidyltransferases
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G39740 : Nucleotidyltransferase family protein
RAP-DB (Rice) LOC_Os01g62780.1,LOC_Os01g62790.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium PNT73182
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G289800 HMG1/2, putative, expressed -
2 Sobic.003G085900 Glycosyl hydrolase. predicted target of sbi-miR-5568 and sbi-miR-6220 expressed in the stems of sweet sorghum(PubMedID : 26117170)@glycosyl hydrolase, family 31, putative, expressed K15925: alpha-D-xyloside xylohydrolase
3 Sobic.002G360600 expressed protein -
4 Sobic.006G163300 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
5 Sobic.001G455900 "qGL3-2/qLGY3(Ortholog in rice:Yu et al., 2018/Liu et al., 2018)"(PubMedID : 31659846)@determinacy of the spikelet meristem and determining the identity of lemmas and paleas(PubMedID : 15208396)@OsMADS1 - MADS-box family gene with MIKCc type-box, expressed -
6 Sobic.003G010700 plant-specific domain TIGR01568 family protein, expressed -
7 Sobic.004G237000 down-regulated TF in developmental senescence(PubMedID : 27586543)@"PGL2(Ortholog in rice:Heang and Sassa, 2012b(PubMedID : 31659886)@helix-loop-helix DNA-binding domain containing protein, expressed -
8 Sobic.001G101900 SCP-like extracellular protein, expressed -
9 Sobic.003G316601 - -
10 Sobic.003G046400 transcriptional corepressor LEUNIG, putative, expressed -
11 Sobic.006G107500 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
12 Sobic.001G137600 ankyrin, putative, expressed -
13 Sobic.002G227900 gibberellin receptor GID1L2, putative, expressed -
14 Sobic.006G271600 RNA recognition motif containing protein, putative, expressed K13126: polyadenylate-binding protein
15 Sobic.004G229200 phosphate-induced protein 1 conserved region domain containing protein, expressed -
16 Sobic.002G128000 receptor protein kinase, putative, expressed -
17 Sobic.001G300400 expansin precursor, putative, expressed -
18 Sobic.007G017700 IQ calmodulin-binding motif domain containing protein, expressed -
19 Sobic.010G269700 expressed protein -
20 Sobic.001G464800 cyclin, putative, expressed K18811: cyclin D5, plant


Gene co-expression network
sample Sobic003G354232 Sobic003G354232 Sobic002G289800 Sobic002G289800 Sobic003G354232--Sobic002G289800 Sobic003G085900 Sobic003G085900 Sobic003G354232--Sobic003G085900 Sobic002G360600 Sobic002G360600 Sobic003G354232--Sobic002G360600 Sobic006G163300 Sobic006G163300 Sobic003G354232--Sobic006G163300 Sobic001G455900 Sobic001G455900 Sobic003G354232--Sobic001G455900 Sobic003G010700 Sobic003G010700 Sobic003G354232--Sobic003G010700 Sobic004G237000 Sobic004G237000 Sobic003G354232--Sobic004G237000 Sobic001G101900 Sobic001G101900 Sobic003G354232--Sobic001G101900 Sobic003G316601 Sobic003G316601 Sobic003G354232--Sobic003G316601 Sobic001G289900 Sobic001G289900 Sobic002G289800--Sobic001G289900 Sobic007G017700 Sobic007G017700 Sobic002G289800--Sobic007G017700 Sobic002G289800--Sobic003G316601 Sobic002G289800--Sobic004G237000 Sobic004G327600 Sobic004G327600 Sobic002G289800--Sobic004G327600 Sobic007G132900 Sobic007G132900 Sobic002G289800--Sobic007G132900 Sobic010G222100 Sobic010G222100 Sobic002G289800--Sobic010G222100 Sobic001G300400 Sobic001G300400 Sobic002G289800--Sobic001G300400 Sobic006G081800 Sobic006G081800 Sobic002G289800--Sobic006G081800 Sobic006G107500 Sobic006G107500 Sobic003G085900--Sobic006G107500 Sobic003G085900--Sobic002G360600 Sobic003G085900--Sobic004G237000 Sobic010G092400 Sobic010G092400 Sobic003G085900--Sobic010G092400 Sobic002G430700 Sobic002G430700 Sobic003G085900--Sobic002G430700 Sobic007G147200 Sobic007G147200 Sobic003G085900--Sobic007G147200 Sobic003G085900--Sobic006G163300 Sobic003G046400 Sobic003G046400 Sobic003G085900--Sobic003G046400 Sobic003G085900--Sobic003G316601 Sobic002G360600--Sobic006G107500 Sobic002G360600--Sobic006G163300 Sobic010G087600 Sobic010G087600 Sobic002G360600--Sobic010G087600 Sobic010G070900 Sobic010G070900 Sobic002G360600--Sobic010G070900 Sobic002G360600--Sobic003G010700 Sobic002G360600--Sobic003G085900 Sobic009G146700 Sobic009G146700 Sobic002G360600--Sobic009G146700 Sobic003G338700 Sobic003G338700 Sobic002G360600--Sobic003G338700 Sobic002G360600--Sobic003G046400 Sobic006G163300--Sobic002G360600 Sobic006G163300--Sobic001G455900 Sobic006G163300--Sobic003G046400 Sobic006G163300--Sobic003G010700 Sobic006G163300--Sobic010G070900 Sobic006G163300--Sobic007G147200 Sobic007G033700 Sobic007G033700 Sobic006G163300--Sobic007G033700 Sobic006G163300--Sobic006G107500 Sobic006G163300--Sobic001G101900 Sobic001G455900--Sobic003G046400 Sobic001G455900--Sobic006G163300 Sobic001G455900--Sobic007G033700 Sobic009G243000 Sobic009G243000 Sobic001G455900--Sobic009G243000 Sobic010G247000 Sobic010G247000 Sobic001G455900--Sobic010G247000 Sobic006G271600 Sobic006G271600 Sobic001G455900--Sobic006G271600 Sobic001G071600 Sobic001G071600 Sobic001G455900--Sobic001G071600 Sobic001G137600 Sobic001G137600 Sobic001G455900--Sobic001G137600 Sobic001G455900--Sobic010G070900 Sobic002G363300 Sobic002G363300 Sobic003G010700--Sobic002G363300 Sobic006G273600 Sobic006G273600 Sobic003G010700--Sobic006G273600 Sobic007G170100 Sobic007G170100 Sobic003G010700--Sobic007G170100 Sobic003G010700--Sobic006G163300 Sobic005G199700 Sobic005G199700 Sobic003G010700--Sobic005G199700 Sobic003G010700--Sobic002G360600 Sobic003G010700--Sobic009G146700 Sobic003G010700--Sobic003G338700 Sobic010G276600 Sobic010G276600 Sobic003G010700--Sobic010G276600 Sobic004G237000--Sobic003G316601 Sobic004G237000--Sobic003G085900 Sobic004G237000--Sobic007G033700 Sobic004G237000--Sobic003G046400 Sobic004G237000--Sobic010G070900 Sobic002G426000 Sobic002G426000 Sobic004G237000--Sobic002G426000 Sobic004G237000--Sobic007G147200 Sobic004G237000--Sobic009G243000 Sobic001G106500 Sobic001G106500 Sobic004G237000--Sobic001G106500 Sobic001G101900--Sobic006G163300 Sobic001G101900--Sobic007G147200 Sobic006G274200 Sobic006G274200 Sobic001G101900--Sobic006G274200 Sobic001G101900--Sobic010G070900 Sobic003G019900 Sobic003G019900 Sobic001G101900--Sobic003G019900 Sobic001G101900--Sobic002G360600 Sobic004G003700 Sobic004G003700 Sobic001G101900--Sobic004G003700 Sobic009G087700 Sobic009G087700 Sobic001G101900--Sobic009G087700 Sobic003G002000 Sobic003G002000 Sobic001G101900--Sobic003G002000 Sobic003G316601--Sobic004G237000 Sobic003G316601--Sobic007G147200 Sobic003G316601--Sobic001G106500 Sobic003G316601--Sobic003G085900 Sobic003G316601--Sobic003G046400 Sobic003G316601--Sobic010G070900 Sobic003G316601--Sobic006G107500 Sobic003G092300 Sobic003G092300 Sobic003G316601--Sobic003G092300 Sobic010G255000 Sobic010G255000 Sobic003G316601--Sobic010G255000
Octagon: transcription factors


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