Gene annotation
Transcriptome id Sobic.002G178800.2
Synonym
Functional annotation ubiquitin fusion protein, putative, expressed
UniProt A0A1W0W4T7
Pfam PF11976 PF01020
Panther DB PTHR10666
NCBI CDD KOG0003; Ubiquitin/60s ribosomal protein L40 fusion
KEGG Orthology K02927; RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT2G36170 : Ubiquitin supergroup;Ribosomal protein L40e
RAP-DB (Rice) LOC_Os07g30640.1 : ubiquitin fusion protein, putative, expressed
MaizeGDB (Corn) Zm00025a036147 , Zm00025a042947 , Zm00025a042035 , Zm00025a005173 , Zm00025a001454 , Zm00025a050018 , Zm00025a001458 , Zm00025a037444 , Zm00025a048116 , Zm00025a039850 , Zm00025a013490
Brachypodium KQJ91591 , KQK04218 , KQK17173 , KQK06725 , KQK04203 , PNT77709 , PNT77708 , KQK04197 , KQJ97255 , KQK04204 , KQJ89932 , KQJ93464 , KQJ93465 , PNT72009 , KQK16153 , PNT65948
Barley HORVU6Hr1G026280.8 , HORVU6Hr1G026280.9 , HORVU6Hr1G026280.6 , HORVU6Hr1G026280.7 , HORVU6Hr1G026280.4 , HORVU6Hr1G026280.5 , HORVU6Hr1G026280.2 , HORVU6Hr1G026280.3 , HORVU2Hr1G104390.2 , HORVU2Hr1G104390.1 , HORVU4Hr1G001170.5 , HORVU4Hr1G001170.4 , HORVU4Hr1G065100.1 , HORVU4Hr1G001170.1 , HORVU4Hr1G001170.3 , HORVU4Hr1G001170.2 , HORVU1Hr1G043930.6 , HORVU1Hr1G043930.7 , HORVU1Hr1G043930.4 , HORVU1Hr1G043930.5 , HORVU1Hr1G043930.2 , HORVU1Hr1G043930.3 , HORVU1Hr1G043930.1 , HORVU1Hr1G043930.8 , HORVU1Hr1G043930.9 , HORVU2Hr1G104410.8 , HORVU2Hr1G104410.9 , HORVU2Hr1G104410.1 , HORVU2Hr1G104410.2 , HORVU2Hr1G104410.3 , HORVU2Hr1G104410.4 , HORVU2Hr1G104410.5 , HORVU2Hr1G104410.6 , HORVU2Hr1G104410.7 , HORVU6Hr1G029050.4 , HORVU1Hr1G043930.10 , HORVU1Hr1G043930.11 , HORVU5Hr1G072680.1 , HORVU5Hr1G072680.2 , HORVU5Hr1G072680.3 , HORVU7Hr1G029070.1 , HORVU2Hr1G104440.3 , HORVU2Hr1G104440.2 , HORVU2Hr1G104440.1 , HORVU2Hr1G104440.7 , HORVU2Hr1G104440.6 , HORVU2Hr1G104440.5 , HORVU2Hr1G104440.4 , HORVU2Hr1G104410.12 , HORVU2Hr1G104410.13 , HORVU2Hr1G104410.10 , HORVU2Hr1G104410.11 , HORVU2Hr1G104410.16 , HORVU2Hr1G104410.17 , HORVU2Hr1G104410.14 , HORVU2Hr1G104410.15 , HORVU2Hr1G104410.18 , HORVU2Hr1G104410.19 , HORVU4Hr1G065100.2 , HORVU4Hr1G065100.3 , HORVU6Hr1G026260.18 , HORVU6Hr1G026260.19 , HORVU6Hr1G026260.16 , HORVU6Hr1G026260.17 , HORVU6Hr1G026260.14 , HORVU6Hr1G026260.15 , HORVU6Hr1G026260.12 , HORVU6Hr1G026260.13 , HORVU6Hr1G026260.10 , HORVU7Hr1G103550.2 , HORVU7Hr1G103550.4 , HORVU3Hr1G014180.1 , HORVU6Hr1G026200.6 , HORVU6Hr1G026200.4 , HORVU6Hr1G026200.5 , HORVU6Hr1G026200.2 , HORVU6Hr1G026200.3 , HORVU6Hr1G026200.1 , HORVU6Hr1G026200.8 , HORVU1Hr1G082070.1 , HORVU3Hr1G014150.2 , HORVU3Hr1G014150.3 , HORVU3Hr1G014150.1 , HORVU3Hr1G014150.4 , HORVU3Hr1G014150.5 , HORVU6Hr1G026260.8 , HORVU6Hr1G026260.7 , HORVU6Hr1G026260.1 , HORVU6Hr1G026260.2 , HORVU6Hr1G026200.19 , HORVU6Hr1G026200.14 , HORVU6Hr1G026200.15 , HORVU6Hr1G026200.10 , HORVU6Hr1G026200.11 , HORVU6Hr1G026200.13 , HORVU2Hr1G104410.23 , HORVU2Hr1G104410.22 , HORVU2Hr1G104410.21 , HORVU2Hr1G104410.20 , HORVU2Hr1G104410.26 , HORVU2Hr1G104410.25 , HORVU2Hr1G104410.24 , HORVU6Hr1G026260.20 , HORVU7Hr1G103330.6 , HORVU4Hr1G040980.1 , HORVU7Hr1G029100.1 , HORVU6Hr1G021700.6 , HORVU6Hr1G021700.4 , HORVU6Hr1G021700.2 , HORVU6Hr1G026280.14 , HORVU6Hr1G026280.15 , HORVU6Hr1G026280.16 , HORVU6Hr1G026280.10 , HORVU6Hr1G026280.11 , HORVU6Hr1G026280.12 , HORVU6Hr1G026280.13 , HORVU6Hr1G029050.2 , HORVU6Hr1G029050.3 , HORVU6Hr1G029050.1 , HORVU6Hr1G029050.6 , HORVU6Hr1G029050.7 , HORVU6Hr1G029050.5 , HORVU6Hr1G029050.8 , HORVU6Hr1G029050.9 , HORVU3Hr1G014180.5 , HORVU3Hr1G014180.4 , HORVU3Hr1G014180.3 , HORVU3Hr1G014180.2 , HORVU6Hr1G026200.21 , HORVU6Hr1G026200.22 , HORVU4Hr1G061900.4 , HORVU4Hr1G061900.2 , HORVU4Hr1G061900.3 , HORVU4Hr1G061900.1 , HORVU7Hr1G109650.1 , HORVU7Hr1G109650.2
Wheat TraesCS7D02G474300 , TraesCS6A02G136700 , TraesCS4D02G006900 , TraesCS6B02G148000 , TraesCS2D02G459100 , TraesCS2A02G408500 , TraesCS2D02G405500 , TraesCS2B02G426500 , TraesCS7B02G390900 , TraesCS2A02G458000 , TraesCS2B02G480600 , TraesCS4B02G233100 , TraesCS6A02G148100 , TraesCS6A02G119700 , TraesCS6A02G119700 , TraesCS2D02G458600 , TraesCS2A02G458600 , TraesCSU02G018500 , TraesCS4B02G233100 , TraesCS4A02G086400 , TraesCS4D02G218400 , TraesCS7D02G474200 , TraesCS4B02G218100 , TraesCS1B02G241200 , TraesCS6B02G176000 , TraesCS4D02G218300 , TraesCS2D02G092200 , TraesCS4B02G008400 , TraesCS6B02G110300 , TraesCS7B02G413800 , TraesCS6D02G137400 , TraesCS6D02G136800 , TraesCS5D02G269800 , TraesCS2D02G459200 , TraesCS6A02G147500 , TraesCS4D02G234300 , TraesCS4D02G234300 , TraesCS1A02G227100 , TraesCS2A02G458800 , TraesCS2D02G580700 , TraesCS4A02G086300 , TraesCS2B02G480300 , TraesCS2B02G480400 , TraesCS7D02G494400 , TraesCS6D02G125600 , TraesCS7B02G390800 , TraesCS4A02G077000 , TraesCS4A02G077000 , TraesCS2A02G408200 , TraesCS4B02G218000 , TraesCS2A02G458100 , TraesCS2D02G092300 , TraesCS2B02G480500 , TraesCS5B02G260700 , TraesCS4A02G306500 , TraesCS6B02G176400 , TraesCS7A02G487500 , TraesCS1D02G228700
Populus PNT28506


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G078900 agenet domain containing protein, expressed -
2 Sobic.010G048600 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
3 Sobic.001G459400 B3 DNA binding domain containing protein, expressed -
4 Sobic.002G178700 ubiquitin fusion protein, putative, expressed -
5 Sobic.001G459300 - -
6 Sobic.001G106500 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
7 Sobic.003G092300 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
8 Sobic.003G006000 expressed protein -
9 Sobic.001G456000 YABBY domain containing protein, putative, expressed -
10 Sobic.009G075500 OsMADS58 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
11 Sobic.010G183800 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
12 Sobic.001G419500 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
13 Sobic.005G070700 - -
14 Sobic.003G300000 expressed protein -
15 Sobic.003G117200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
16 Sobic.002G343600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@-(PubMedID : 23108465)@polygalacturonase inhibitor 1 precursor, putative, expressed -
17 Sobic.004G237000 down-regulated TF in developmental senescence(PubMedID : 27586543)@"PGL2(Ortholog in rice:Heang and Sassa, 2012b(PubMedID : 31659886)@helix-loop-helix DNA-binding domain containing protein, expressed -
18 Sobic.009G243000 OsFBL2 - F-box domain and LRR containing protein, expressed -
19 Sobic.004G277700 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
20 Sobic.004G281000 MIKC-type MADS box transcription factors(PubMedID : 19749151)@OsMADS6 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant


Gene co-expression network
sample Sobic002G178800 Sobic002G178800 Sobic002G078900 Sobic002G078900 Sobic002G178800--Sobic002G078900 Sobic010G048600 Sobic010G048600 Sobic002G178800--Sobic010G048600 Sobic001G459400 Sobic001G459400 Sobic002G178800--Sobic001G459400 Sobic002G178700 Sobic002G178700 Sobic002G178800--Sobic002G178700 Sobic001G459300 Sobic001G459300 Sobic002G178800--Sobic001G459300 Sobic001G106500 Sobic001G106500 Sobic002G178800--Sobic001G106500 Sobic003G092300 Sobic003G092300 Sobic002G178800--Sobic003G092300 Sobic003G006000 Sobic003G006000 Sobic002G178800--Sobic003G006000 Sobic001G456000 Sobic001G456000 Sobic002G178800--Sobic001G456000 Sobic002G078900--Sobic001G456000 Sobic010G183800 Sobic010G183800 Sobic002G078900--Sobic010G183800 Sobic002G078900--Sobic001G459400 Sobic003G300000 Sobic003G300000 Sobic002G078900--Sobic003G300000 Sobic002G078900--Sobic001G106500 Sobic001G071600 Sobic001G071600 Sobic002G078900--Sobic001G071600 Sobic002G078900--Sobic001G459300 Sobic002G078900--Sobic003G092300 Sobic009G243000 Sobic009G243000 Sobic002G078900--Sobic009G243000 Sobic010G048600--Sobic001G459300 Sobic005G070700 Sobic005G070700 Sobic010G048600--Sobic005G070700 Sobic010G048600--Sobic001G459400 Sobic010G048600--Sobic001G106500 Sobic001G274300 Sobic001G274300 Sobic010G048600--Sobic001G274300 Sobic010G048600--Sobic001G456000 Sobic010G048600--Sobic003G092300 Sobic010G048600--Sobic002G078900 Sobic010G048600--Sobic010G183800 Sobic001G459400--Sobic003G092300 Sobic001G459400--Sobic001G459300 Sobic001G459400--Sobic005G070700 Sobic001G459400--Sobic010G183800 Sobic001G459400--Sobic010G048600 Sobic009G075500 Sobic009G075500 Sobic001G459400--Sobic009G075500 Sobic001G459400--Sobic002G078900 Sobic009G063700 Sobic009G063700 Sobic001G459400--Sobic009G063700 Sobic006G015100 Sobic006G015100 Sobic001G459400--Sobic006G015100 Sobic001G419500 Sobic001G419500 Sobic002G178700--Sobic001G419500 Sobic002G178700--Sobic003G006000 Sobic001G137500 Sobic001G137500 Sobic002G178700--Sobic001G137500 Sobic003G088600 Sobic003G088600 Sobic002G178700--Sobic003G088600 Sobic002G178700--Sobic009G063700 Sobic002G178700--Sobic002G078900 Sobic002G178700--Sobic001G459400 Sobic008G137700 Sobic008G137700 Sobic002G178700--Sobic008G137700 Sobic002G178700--Sobic003G300000 Sobic001G459300--Sobic005G070700 Sobic001G459300--Sobic010G048600 Sobic001G459300--Sobic001G459400 Sobic001G459300--Sobic001G106500 Sobic001G459300--Sobic001G274300 Sobic001G459300--Sobic001G456000 Sobic001G459300--Sobic003G092300 Sobic001G459300--Sobic002G078900 Sobic001G459300--Sobic010G183800 Sobic001G106500--Sobic001G459300 Sobic001G106500--Sobic010G048600 Sobic001G106500--Sobic003G092300 Sobic001G106500--Sobic001G456000 Sobic001G106500--Sobic005G070700 Sobic003G046400 Sobic003G046400 Sobic001G106500--Sobic003G046400 Sobic001G106500--Sobic002G078900 Sobic001G106500--Sobic001G459400 Sobic001G106500--Sobic010G183800 Sobic003G092300--Sobic001G459400 Sobic003G092300--Sobic010G183800 Sobic003G092300--Sobic001G459300 Sobic003G092300--Sobic001G106500 Sobic003G092300--Sobic003G300000 Sobic003G092300--Sobic010G048600 Sobic003G092300--Sobic009G075500 Sobic001G158100 Sobic001G158100 Sobic003G092300--Sobic001G158100 Sobic003G092300--Sobic005G070700 Sobic003G006000--Sobic002G178700 Sobic003G006000--Sobic001G137500 Sobic003G006000--Sobic001G419500 Sobic006G271600 Sobic006G271600 Sobic003G006000--Sobic006G271600 Sobic003G006000--Sobic002G078900 Sobic003G006000--Sobic003G088600 Sobic003G006000--Sobic009G243000 Sobic002G258000 Sobic002G258000 Sobic003G006000--Sobic002G258000 Sobic001G457600 Sobic001G457600 Sobic003G006000--Sobic001G457600 Sobic001G456000--Sobic002G078900 Sobic001G456000--Sobic010G183800 Sobic001G456000--Sobic001G459300 Sobic001G456000--Sobic010G048600 Sobic001G456000--Sobic001G459400 Sobic001G456000--Sobic001G106500 Sobic001G456000--Sobic005G070700 Sobic003G243100 Sobic003G243100 Sobic001G456000--Sobic003G243100 Sobic004G277700 Sobic004G277700 Sobic001G456000--Sobic004G277700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.