Gene annotation
Transcriptome id Sobic.002G233600.6,Sobic.002G233600.1,Sobic.002G233600.2,Sobic.002G233600.4,Sobic.002G233600.5
Synonym ISA3, ATISA3, Sb02g027280
Functional annotation glycogen operon protein glgX, putative, expressed
UniProt A0A1W0W5I6 , A0A1B6QD19
Pfam PF00128 PF02922 PF02922 PF00128
Panther DB PTHR10357:SF74 PTHR10357 PTHR10357 PTHR10357:SF74
NCBI CDD -
KEGG Orthology K01214; ISA, isoamylase
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds GO:0003824catalytic activity GO:0003824catalytic activity GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds GO:0005975carbohydrate metabolic process


Orthologs (automatic annotation)
TAIR AT4G09020 : isoamylase 3
RAP-DB (Rice) LOC_Os09g29404.3,LOC_Os09g29404.1 : glycogen operon protein glgX, putative, expressed
MaizeGDB (Corn) Zm00025a047339 , Zm00025a014125
Brachypodium KQJ90594 , KQJ90593
Barley HORVU5Hr1G070160.9 , HORVU5Hr1G070160.8 , HORVU5Hr1G070160.3 , HORVU5Hr1G070160.2 , HORVU5Hr1G070160.1 , HORVU5Hr1G070160.7 , HORVU5Hr1G070160.6 , HORVU5Hr1G070160.5 , HORVU5Hr1G070160.4 , HORVU5Hr1G070160.19 , HORVU5Hr1G070160.18 , HORVU5Hr1G070160.13 , HORVU5Hr1G070160.12 , HORVU5Hr1G070160.11 , HORVU5Hr1G070160.10 , HORVU5Hr1G070160.17 , HORVU5Hr1G070160.16 , HORVU5Hr1G070160.15 , HORVU5Hr1G070160.14 , HORVU5Hr1G070160.31 , HORVU5Hr1G070160.30 , HORVU5Hr1G070160.32 , HORVU5Hr1G070160.22 , HORVU5Hr1G070160.23 , HORVU5Hr1G070160.20 , HORVU5Hr1G070160.21 , HORVU5Hr1G070160.26 , HORVU5Hr1G070160.27 , HORVU5Hr1G070160.24 , HORVU5Hr1G070160.25 , HORVU5Hr1G070160.29 , HORVU5Hr1G070160.28
Wheat TraesCS5D02G255800 , TraesCS5A02G248700 , TraesCS5A02G248700 , TraesCS5B02G246400
Populus PNT48891 , PNT48893 , PNT48894 , PNT48892


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cDNA sequences
Sobic.002G233600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G178400 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
2 Sobic.001G308000 viral A-type inclusion protein repeat containing protein, expressed -
3 Sobic.009G230800 Up-regulation in phyB-1 mutant(PubMedID : 26893475)@inhibiting the nuclear localization of BRASSINOSTEROID INSENSITIVE 2(PubMedID : 28273925)@decreased the cell proliferation rates(PubMedID : 27329702)@gibberellin 2-beta-dioxygenase, putative, expressed K04125: gibberellin 2beta-dioxygenase
4 Sobic.007G039200 MYB family transcription factor, putative, expressed -
5 Sobic.007G048101 - -
6 Sobic.009G238650 - -
7 Sobic.001G340800 exocyst complex component 6, putative, expressed -
8 Sobic.006G001100 ELMO/CED-12 family protein, putative, expressed -
9 Sobic.003G358600 similar to Phosphorylase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@alpha-glucan phosphorylast isozyme, putative, expressed K00688: PYG, glycogen phosphorylase
10 Sobic.008G136601 - -
11 Sobic.006G239500 plant protein of unknown function domain containing protein, expressed -
12 Sobic.003G024100 MRH1, putative, expressed -
13 Sobic.010G073900 expressed protein -
14 Sobic.001G384200 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
15 Sobic.002G088600 glucose-1-phosphate adenylyltransferase large subunit, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
16 Sobic.009G113500 expressed protein -
17 Sobic.008G166100 glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
18 Sobic.006G204400 maltose excess protein 1-like, chloroplast precursor, putative, expressed -
19 Sobic.004G349600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
20 Sobic.004G177900 - -


Gene co-expression network
sample Sobic002G233600 Sobic002G233600 Sobic009G178400 Sobic009G178400 Sobic002G233600--Sobic009G178400 Sobic001G308000 Sobic001G308000 Sobic002G233600--Sobic001G308000 Sobic009G230800 Sobic009G230800 Sobic002G233600--Sobic009G230800 Sobic007G039200 Sobic007G039200 Sobic002G233600--Sobic007G039200 Sobic007G048101 Sobic007G048101 Sobic002G233600--Sobic007G048101 Sobic009G238650 Sobic009G238650 Sobic002G233600--Sobic009G238650 Sobic001G340800 Sobic001G340800 Sobic002G233600--Sobic001G340800 Sobic006G001100 Sobic006G001100 Sobic002G233600--Sobic006G001100 Sobic003G358600 Sobic003G358600 Sobic002G233600--Sobic003G358600 Sobic001G384200 Sobic001G384200 Sobic009G178400--Sobic001G384200 Sobic009G178400--Sobic001G340800 Sobic009G178400--Sobic002G233600 Sobic008G166100 Sobic008G166100 Sobic009G178400--Sobic008G166100 Sobic009G178400--Sobic007G039200 Sobic009G178400--Sobic007G048101 Sobic001G432200 Sobic001G432200 Sobic009G178400--Sobic001G432200 Sobic009G178400--Sobic001G308000 Sobic002G088600 Sobic002G088600 Sobic009G178400--Sobic002G088600 Sobic005G120400 Sobic005G120400 Sobic001G308000--Sobic005G120400 Sobic010G177500 Sobic010G177500 Sobic001G308000--Sobic010G177500 Sobic005G092100 Sobic005G092100 Sobic001G308000--Sobic005G092100 Sobic004G349600 Sobic004G349600 Sobic001G308000--Sobic004G349600 Sobic001G308000--Sobic009G238650 Sobic003G191350 Sobic003G191350 Sobic001G308000--Sobic003G191350 Sobic001G308000--Sobic002G088600 Sobic002G372000 Sobic002G372000 Sobic001G308000--Sobic002G372000 Sobic001G165901 Sobic001G165901 Sobic001G308000--Sobic001G165901 Sobic010G202200 Sobic010G202200 Sobic009G230800--Sobic010G202200 Sobic006G269101 Sobic006G269101 Sobic009G230800--Sobic006G269101 Sobic004G052600 Sobic004G052600 Sobic009G230800--Sobic004G052600 Sobic008G136601 Sobic008G136601 Sobic009G230800--Sobic008G136601 Sobic009G230800--Sobic001G340800 Sobic004G328500 Sobic004G328500 Sobic009G230800--Sobic004G328500 Sobic008G148600 Sobic008G148600 Sobic009G230800--Sobic008G148600 Sobic005G000900 Sobic005G000900 Sobic009G230800--Sobic005G000900 Sobic005G221675 Sobic005G221675 Sobic009G230800--Sobic005G221675 Sobic007G039200--Sobic001G340800 Sobic002G389600 Sobic002G389600 Sobic007G039200--Sobic002G389600 Sobic009G061500 Sobic009G061500 Sobic007G039200--Sobic009G061500 Sobic007G039200--Sobic008G136601 Sobic007G039200--Sobic009G230800 Sobic004G290600 Sobic004G290600 Sobic007G039200--Sobic004G290600 Sobic007G039200--Sobic008G166100 Sobic007G039200--Sobic001G384200 Sobic008G159701 Sobic008G159701 Sobic007G039200--Sobic008G159701 Sobic007G048101--Sobic009G238650 Sobic007G048101--Sobic002G088600 Sobic003G093100 Sobic003G093100 Sobic007G048101--Sobic003G093100 Sobic004G177900 Sobic004G177900 Sobic007G048101--Sobic004G177900 Sobic006G239500 Sobic006G239500 Sobic007G048101--Sobic006G239500 Sobic007G048101--Sobic004G349600 Sobic008G025400 Sobic008G025400 Sobic007G048101--Sobic008G025400 Sobic010G073900 Sobic010G073900 Sobic007G048101--Sobic010G073900 Sobic001G294500 Sobic001G294500 Sobic007G048101--Sobic001G294500 Sobic009G238650--Sobic006G239500 Sobic009G238650--Sobic004G349600 Sobic002G199800 Sobic002G199800 Sobic009G238650--Sobic002G199800 Sobic009G238650--Sobic010G073900 Sobic009G238650--Sobic002G088600 Sobic010G128350 Sobic010G128350 Sobic009G238650--Sobic010G128350 Sobic009G238650--Sobic005G120400 Sobic003G407700 Sobic003G407700 Sobic009G238650--Sobic003G407700 Sobic009G238650--Sobic007G048101 Sobic001G370400 Sobic001G370400 Sobic001G340800--Sobic001G370400 Sobic009G061601 Sobic009G061601 Sobic001G340800--Sobic009G061601 Sobic001G340800--Sobic008G136601 Sobic001G340800--Sobic004G290600 Sobic001G340800--Sobic009G061500 Sobic008G020800 Sobic008G020800 Sobic001G340800--Sobic008G020800 Sobic001G340800--Sobic001G294500 Sobic007G131000 Sobic007G131000 Sobic001G340800--Sobic007G131000 Sobic001G340800--Sobic003G093100 Sobic006G001100--Sobic008G136601 Sobic007G176900 Sobic007G176900 Sobic006G001100--Sobic007G176900 Sobic006G027601 Sobic006G027601 Sobic006G001100--Sobic006G027601 Sobic003G333100 Sobic003G333100 Sobic006G001100--Sobic003G333100 Sobic006G001100--Sobic009G061601 Sobic006G205400 Sobic006G205400 Sobic006G001100--Sobic006G205400 Sobic002G295800 Sobic002G295800 Sobic006G001100--Sobic002G295800 Sobic003G175000 Sobic003G175000 Sobic006G001100--Sobic003G175000 Sobic002G254700 Sobic002G254700 Sobic006G001100--Sobic002G254700 Sobic003G358600--Sobic001G308000 Sobic006G193400 Sobic006G193400 Sobic003G358600--Sobic006G193400 Sobic003G358600--Sobic009G178400 Sobic003G358600--Sobic009G238650 Sobic003G358600--Sobic007G048101 Sobic006G204400 Sobic006G204400 Sobic003G358600--Sobic006G204400 Sobic003G358600--Sobic002G088600 Sobic003G358600--Sobic001G340800 Sobic003G244400 Sobic003G244400 Sobic003G358600--Sobic003G244400
Octagon: transcription factors


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