Gene annotation
Transcriptome id Sobic.001G479300.1
Synonym Sb01g044890, VPS22
Functional annotation EAP30/Vps36 family domain containing protein, expressed
UniProt C5WUX2
Pfam PF04157
Panther DB PTHR12806 PTHR12806:SF0
NCBI CDD KOG3341; RNA polymerase II transcription factor complex subunit
KEGG Orthology K12188; SNF8, ESCRT-II complex subunit VPS22
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G27040 : EAP30/Vps36 family protein
RAP-DB (Rice) LOC_Os09g36020.1 : EAP30/Vps36 family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a014404
Brachypodium KQJ91140
Barley -
Wheat TraesCS5A02G316100 , TraesCS5D02G322300 , TraesCS5B02G420800 , TraesCS5B02G316600 , TraesCS5B02G316600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
2 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
3 Sobic.009G087800 seven in absentia protein family domain containing protein, expressed K08742: E3 ubiquitin-protein ligase SIAH2
4 Sobic.002G284200 peroxisomal multifunctional enzyme type 2, putative, expressed -
5 Sobic.005G187200 expressed protein -
6 Sobic.003G324000 3-hydroxybutyryl-CoA dehydrogenase, putative, expressed K00074: paaH, hbd, fadB, 3-hydroxybutyryl-CoA dehydrogenase
7 Sobic.004G119000 OsFBK6 - F-box domain and kelch repeat containing protein, expressed -
8 Sobic.007G150200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MTD1, putative, expressed -
9 Sobic.003G093600 methyltransferase, putative, expressed -
10 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
11 Sobic.007G094801 - -
12 Sobic.010G280100 expressed protein -
13 Sobic.003G202800 holocarboxylase synthetase, putative, expressed -
14 Sobic.009G198900 trehalose synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
15 Sobic.008G041700 TLD family protein, putative, expressed -
16 Sobic.010G056200 WD-40 repeat family protein, putative, expressed -
17 Sobic.007G078000 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
18 Sobic.007G037100 MYB family transcription factor, putative, expressed -
19 Sobic.010G263800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed -
20 Sobic.001G107500 cyclin-dependent kinase, putative, expressed K08819: cyclin-dependent kinase 12/13


Gene co-expression network
sample Sobic001G479300 Sobic001G479300 Sobic004G150400 Sobic004G150400 Sobic001G479300--Sobic004G150400 Sobic007G205800 Sobic007G205800 Sobic001G479300--Sobic007G205800 Sobic009G087800 Sobic009G087800 Sobic001G479300--Sobic009G087800 Sobic002G284200 Sobic002G284200 Sobic001G479300--Sobic002G284200 Sobic005G187200 Sobic005G187200 Sobic001G479300--Sobic005G187200 Sobic003G324000 Sobic003G324000 Sobic001G479300--Sobic003G324000 Sobic004G119000 Sobic004G119000 Sobic001G479300--Sobic004G119000 Sobic007G150200 Sobic007G150200 Sobic001G479300--Sobic007G150200 Sobic003G093600 Sobic003G093600 Sobic001G479300--Sobic003G093600 Sobic004G150400--Sobic004G119000 Sobic010G055500 Sobic010G055500 Sobic004G150400--Sobic010G055500 Sobic004G150400--Sobic007G205800 Sobic002G272800 Sobic002G272800 Sobic004G150400--Sobic002G272800 Sobic010G071200 Sobic010G071200 Sobic004G150400--Sobic010G071200 Sobic001G028400 Sobic001G028400 Sobic004G150400--Sobic001G028400 Sobic006G088100 Sobic006G088100 Sobic004G150400--Sobic006G088100 Sobic004G150400--Sobic003G093600 Sobic006G109300 Sobic006G109300 Sobic004G150400--Sobic006G109300 Sobic007G011400 Sobic007G011400 Sobic007G205800--Sobic007G011400 Sobic007G205800--Sobic009G087800 Sobic010G263800 Sobic010G263800 Sobic007G205800--Sobic010G263800 Sobic008G034600 Sobic008G034600 Sobic007G205800--Sobic008G034600 Sobic004G271900 Sobic004G271900 Sobic007G205800--Sobic004G271900 Sobic009G022200 Sobic009G022200 Sobic007G205800--Sobic009G022200 Sobic007G205800--Sobic003G093600 Sobic003G258400 Sobic003G258400 Sobic007G205800--Sobic003G258400 Sobic002G077200 Sobic002G077200 Sobic007G205800--Sobic002G077200 Sobic009G087800--Sobic007G205800 Sobic009G087800--Sobic003G258400 Sobic009G087800--Sobic007G011400 Sobic009G087800--Sobic003G093600 Sobic009G087800--Sobic004G271900 Sobic009G087800--Sobic010G263800 Sobic010G026400 Sobic010G026400 Sobic009G087800--Sobic010G026400 Sobic001G424700 Sobic001G424700 Sobic009G087800--Sobic001G424700 Sobic009G198900 Sobic009G198900 Sobic009G087800--Sobic009G198900 Sobic003G117000 Sobic003G117000 Sobic002G284200--Sobic003G117000 Sobic002G284200--Sobic007G150200 Sobic001G451000 Sobic001G451000 Sobic002G284200--Sobic001G451000 Sobic007G211000 Sobic007G211000 Sobic002G284200--Sobic007G211000 Sobic002G284200--Sobic003G093600 Sobic007G078000 Sobic007G078000 Sobic002G284200--Sobic007G078000 Sobic001G439500 Sobic001G439500 Sobic002G284200--Sobic001G439500 Sobic002G165300 Sobic002G165300 Sobic002G284200--Sobic002G165300 Sobic002G283300 Sobic002G283300 Sobic002G284200--Sobic002G283300 Sobic005G187200--Sobic010G263800 Sobic005G187200--Sobic004G271900 Sobic001G479500 Sobic001G479500 Sobic005G187200--Sobic001G479500 Sobic004G256600 Sobic004G256600 Sobic005G187200--Sobic004G256600 Sobic005G187200--Sobic007G205800 Sobic005G187200--Sobic007G011400 Sobic005G187200--Sobic002G077200 Sobic009G134500 Sobic009G134500 Sobic005G187200--Sobic009G134500 Sobic001G194900 Sobic001G194900 Sobic005G187200--Sobic001G194900 Sobic003G324000--Sobic009G198900 Sobic001G368400 Sobic001G368400 Sobic003G324000--Sobic001G368400 Sobic003G324000--Sobic005G187200 Sobic010G056200 Sobic010G056200 Sobic003G324000--Sobic010G056200 Sobic003G324000--Sobic001G479500 Sobic010G280100 Sobic010G280100 Sobic003G324000--Sobic010G280100 Sobic003G324000--Sobic007G205800 Sobic003G324000--Sobic009G087800 Sobic003G324000--Sobic003G258400 Sobic004G119000--Sobic004G150400 Sobic004G119000--Sobic010G280100 Sobic001G291100 Sobic001G291100 Sobic004G119000--Sobic001G291100 Sobic003G185200 Sobic003G185200 Sobic004G119000--Sobic003G185200 Sobic004G119000--Sobic002G272800 Sobic004G119000--Sobic009G087800 Sobic010G268300 Sobic010G268300 Sobic004G119000--Sobic010G268300 Sobic002G365100 Sobic002G365100 Sobic004G119000--Sobic002G365100 Sobic004G119000--Sobic007G205800 Sobic007G150200--Sobic002G284200 Sobic007G150200--Sobic003G117000 Sobic007G023700 Sobic007G023700 Sobic007G150200--Sobic007G023700 Sobic007G150200--Sobic003G093600 Sobic004G188300 Sobic004G188300 Sobic007G150200--Sobic004G188300 Sobic001G225100 Sobic001G225100 Sobic007G150200--Sobic001G225100 Sobic005G167300 Sobic005G167300 Sobic007G150200--Sobic005G167300 Sobic010G218500 Sobic010G218500 Sobic007G150200--Sobic010G218500 Sobic010G218100 Sobic010G218100 Sobic007G150200--Sobic010G218100 Sobic003G093600--Sobic007G023700 Sobic003G093600--Sobic009G022200 Sobic003G093600--Sobic004G271900 Sobic003G093600--Sobic007G205800 Sobic004G143700 Sobic004G143700 Sobic003G093600--Sobic004G143700 Sobic009G156000 Sobic009G156000 Sobic003G093600--Sobic009G156000 Sobic003G093600--Sobic009G087800 Sobic003G093600--Sobic003G258400 Sobic003G093600--Sobic001G424700
Octagon: transcription factors


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