Gene annotation
Transcriptome id Sobic.004G188400.3,Sobic.004G188400.1,Sobic.004G188400.2
Synonym CRY1, CRY1-b1, HY4, OOP2, ATCRY1, CRYPTOCHROME 1, Sb04g023680, BLU1
Functional annotation photoperiodic flowering time gene (PubMedID : 22394582)
FAD binding domain of DNA photolyase domain containing protein, expressed
UniProt A0A1Z5RNB4 , A0A194YRM9 , I3RGV9 , A0A194YQH9
Pfam PF03441 PF12546 PF00875 PF03441 PF12546 PF00875 PF12546 PF03441
Panther DB PTHR11455:SF20 PTHR11455 PTHR11455 PTHR11455:SF20
NCBI CDD KOG0133; Deoxyribodipyrimidine photolyase/cryptochrome
KEGG Orthology K12118; cryptochrome 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G08920 : cryptochrome 1
RAP-DB (Rice) LOC_Os02g36380.1 : FAD binding domain of DNA photolyase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a031702 , Zm00025a020783 , Zm00025a001602 , Zm00025a013451 , Zm00025a053699
Brachypodium KQJ99997 , KQJ82910 , KQJ82911
Barley HORVU2Hr1G079220.2 , HORVU2Hr1G079220.3 , HORVU2Hr1G079220.5 , HORVU2Hr1G079220.4 , HORVU2Hr1G079220.6 , HORVU2Hr1G079220.7 , HORVU6Hr1G049950.9 , HORVU6Hr1G049950.11 , HORVU6Hr1G049950.10 , HORVU6Hr1G049950.13 , HORVU6Hr1G049950.12 , HORVU6Hr1G049950.14 , HORVU6Hr1G049950.5 , HORVU6Hr1G049950.7 , HORVU6Hr1G049950.6 , HORVU6Hr1G049950.2 , HORVU6Hr1G049950.1 , HORVU6Hr1G049950.3 , HORVU6Hr1G049950.4
Wheat TraesCS6A02G203300 , TraesCS6D02G187200 , TraesCS2A02G340000 , TraesCS6B02G224100 , TraesCS6B02G224100 , TraesCS2D02G317500 , TraesCS2B02G337900
Populus -


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cDNA sequences
Sobic.004G188400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G372700 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
2 Sobic.004G065650 - -
3 Sobic.009G127900 - -
4 Sobic.003G268300 surp module family protein, putative, expressed -
5 Sobic.006G082600 OsFBX133 - F-box domain containing protein, expressed K10295: F-box protein 9
6 Sobic.005G110472 - -
7 Sobic.004G196700 expressed protein -
8 Sobic.007G037900 oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed -
9 Sobic.002G165300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K11111: TERF2, telomeric repeat-binding factor 2
10 Sobic.002G399100 zinc finger, RING-type, putative, expressed K15688: E3 ubiquitin-protein ligase MUL1
11 Sobic.001G543800 ethylene-responsive element-binding protein, putative, expressed -
12 Sobic.007G137900 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase
13 Sobic.010G124001 - -
14 Sobic.008G013600 - -
15 Sobic.004G290800 GRAS family transcription factor(PubMedID : 23915383)@scarecrow, putative, expressed -
16 Sobic.007G037100 MYB family transcription factor, putative, expressed -
17 Sobic.007G078000 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
18 Sobic.007G096600 - -
19 Sobic.003G176500 - -
20 Sobic.009G140500 no apical meristem protein, putative, expressed -


Gene co-expression network
sample Sobic004G188400 Sobic004G188400 Sobic001G372700 Sobic001G372700 Sobic004G188400--Sobic001G372700 Sobic004G065650 Sobic004G065650 Sobic004G188400--Sobic004G065650 Sobic009G127900 Sobic009G127900 Sobic004G188400--Sobic009G127900 Sobic003G268300 Sobic003G268300 Sobic004G188400--Sobic003G268300 Sobic006G082600 Sobic006G082600 Sobic004G188400--Sobic006G082600 Sobic005G110472 Sobic005G110472 Sobic004G188400--Sobic005G110472 Sobic004G196700 Sobic004G196700 Sobic004G188400--Sobic004G196700 Sobic007G037900 Sobic007G037900 Sobic004G188400--Sobic007G037900 Sobic002G165300 Sobic002G165300 Sobic004G188400--Sobic002G165300 Sobic007G078000 Sobic007G078000 Sobic001G372700--Sobic007G078000 Sobic003G333600 Sobic003G333600 Sobic001G372700--Sobic003G333600 Sobic001G372700--Sobic004G188400 Sobic001G372700--Sobic004G196700 Sobic001G372700--Sobic006G082600 Sobic002G284200 Sobic002G284200 Sobic001G372700--Sobic002G284200 Sobic010G124001 Sobic010G124001 Sobic001G372700--Sobic010G124001 Sobic007G211000 Sobic007G211000 Sobic001G372700--Sobic007G211000 Sobic001G372700--Sobic002G165300 Sobic004G065650--Sobic004G188400 Sobic004G065650--Sobic005G110472 Sobic004G065650--Sobic007G037900 Sobic006G088580 Sobic006G088580 Sobic004G065650--Sobic006G088580 Sobic009G140500 Sobic009G140500 Sobic004G065650--Sobic009G140500 Sobic008G013600 Sobic008G013600 Sobic004G065650--Sobic008G013600 Sobic004G065650--Sobic010G124001 Sobic006G137400 Sobic006G137400 Sobic004G065650--Sobic006G137400 Sobic001G067850 Sobic001G067850 Sobic004G065650--Sobic001G067850 Sobic007G178700 Sobic007G178700 Sobic009G127900--Sobic007G178700 Sobic009G127900--Sobic003G268300 Sobic001G446900 Sobic001G446900 Sobic009G127900--Sobic001G446900 Sobic006G066650 Sobic006G066650 Sobic009G127900--Sobic006G066650 Sobic004G290800 Sobic004G290800 Sobic009G127900--Sobic004G290800 Sobic010G026400 Sobic010G026400 Sobic009G127900--Sobic010G026400 Sobic009G127900--Sobic007G037900 Sobic008G173900 Sobic008G173900 Sobic009G127900--Sobic008G173900 Sobic001G111900 Sobic001G111900 Sobic009G127900--Sobic001G111900 Sobic007G096600 Sobic007G096600 Sobic003G268300--Sobic007G096600 Sobic002G157000 Sobic002G157000 Sobic003G268300--Sobic002G157000 Sobic001G420200 Sobic001G420200 Sobic003G268300--Sobic001G420200 Sobic003G200200 Sobic003G200200 Sobic003G268300--Sobic003G200200 Sobic002G248400 Sobic002G248400 Sobic003G268300--Sobic002G248400 Sobic003G268300--Sobic009G127900 Sobic003G268300--Sobic007G178700 Sobic003G268300--Sobic007G037900 Sobic003G268300--Sobic008G173900 Sobic001G162300 Sobic001G162300 Sobic006G082600--Sobic001G162300 Sobic006G082600--Sobic007G178700 Sobic007G037100 Sobic007G037100 Sobic006G082600--Sobic007G037100 Sobic001G251700 Sobic001G251700 Sobic006G082600--Sobic001G251700 Sobic006G082600--Sobic004G196700 Sobic009G134500 Sobic009G134500 Sobic006G082600--Sobic009G134500 Sobic006G082600--Sobic010G124001 Sobic006G082600--Sobic009G127900 Sobic006G082600--Sobic002G157000 Sobic003G170100 Sobic003G170100 Sobic005G110472--Sobic003G170100 Sobic005G110472--Sobic007G096600 Sobic005G110472--Sobic003G268300 Sobic003G390400 Sobic003G390400 Sobic005G110472--Sobic003G390400 Sobic002G243900 Sobic002G243900 Sobic005G110472--Sobic002G243900 Sobic005G110472--Sobic003G200200 Sobic007G113800 Sobic007G113800 Sobic005G110472--Sobic007G113800 Sobic007G137900 Sobic007G137900 Sobic005G110472--Sobic007G137900 Sobic003G176500 Sobic003G176500 Sobic005G110472--Sobic003G176500 Sobic007G185900 Sobic007G185900 Sobic004G196700--Sobic007G185900 Sobic004G196700--Sobic007G078000 Sobic005G149500 Sobic005G149500 Sobic004G196700--Sobic005G149500 Sobic004G196700--Sobic007G137900 Sobic002G157300 Sobic002G157300 Sobic004G196700--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic004G196700--Sobic003G187400 Sobic001G477800 Sobic001G477800 Sobic004G196700--Sobic001G477800 Sobic004G196700--Sobic006G082600 Sobic009G040700 Sobic009G040700 Sobic004G196700--Sobic009G040700 Sobic007G037900--Sobic003G268300 Sobic007G037900--Sobic001G420200 Sobic006G246900 Sobic006G246900 Sobic007G037900--Sobic006G246900 Sobic002G144933 Sobic002G144933 Sobic007G037900--Sobic002G144933 Sobic001G274200 Sobic001G274200 Sobic007G037900--Sobic001G274200 Sobic007G037900--Sobic009G127900 Sobic007G037900--Sobic001G162300 Sobic007G037900--Sobic004G290800 Sobic007G037900--Sobic002G157000 Sobic009G156000 Sobic009G156000 Sobic002G165300--Sobic009G156000 Sobic002G165300--Sobic004G196700 Sobic002G165300--Sobic005G149500 Sobic002G165300--Sobic007G211000 Sobic010G199600 Sobic010G199600 Sobic002G165300--Sobic010G199600 Sobic002G165300--Sobic007G078000 Sobic002G165300--Sobic002G284200 Sobic002G165300--Sobic010G026400 Sobic002G165300--Sobic007G037100
Octagon: transcription factors


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