Gene annotation
Transcriptome id Sobic.005G018050.3,Sobic.005G018050.4,Sobic.005G018050.2,Sobic.005G018050.1
Synonym -
Functional annotation -
UniProt A0A1Z5RG57 , A0A1Z5RG67 , A0A1Z5RG83 , A0A1Z5RGW4
Pfam PF00642 PF13893
Panther DB PTHR24009 PTHR24009:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G51950 : Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
RAP-DB (Rice) LOC_Os12g02970.1,LOC_Os07g48410.2,LOC_Os03g21140.1 : RNA binding protein, putative, expressed,RNA-binding zinc finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a029001 , Zm00025a053753 , Zm00025a034583 , Zm00025a033343 , Zm00025a049183 , Zm00025a052452
Brachypodium KQK21862 , KQK21863 , PNT74552 , PNT65530 , PNT77483 , KQK14595
Barley HORVU2Hr1G017490.6 , HORVU5Hr1G045860.4 , HORVU2Hr1G017490.9 , HORVU2Hr1G017490.8 , HORVU2Hr1G017490.7 , HORVU2Hr1G017490.4 , HORVU2Hr1G017490.3 , HORVU2Hr1G017490.2 , HORVU2Hr1G017490.16 , HORVU2Hr1G017490.15 , HORVU2Hr1G017490.14 , HORVU2Hr1G017490.13 , HORVU2Hr1G017490.12 , HORVU2Hr1G017490.11 , HORVU2Hr1G017490.10 , HORVU5Hr1G045860.10 , HORVU5Hr1G045860.11 , HORVU5Hr1G045860.12 , HORVU5Hr1G045860.13 , HORVU5Hr1G045860.6 , HORVU5Hr1G045860.7 , HORVU5Hr1G045860.5 , HORVU5Hr1G045860.2 , HORVU5Hr1G045860.3 , HORVU5Hr1G045860.1 , HORVU5Hr1G045860.8 , HORVU5Hr1G045860.9 , HORVU2Hr1G017490.5
Wheat TraesCS2D02G101800 , TraesCS2D02G101800 , TraesCS2D02G101800 , TraesCS2D02G101800 , TraesCS2D02G101800 , TraesCS5B02G142300 , TraesCS5B02G142300 , TraesCS5B02G142300 , TraesCS5B02G142300 , TraesCS4A02G190800 , TraesCS2A02G102300 , TraesCS4A02G190800 , TraesCS5D02G148600 , TraesCS5D02G148600 , TraesCS5A02G143400 , TraesCS5A02G143400 , TraesCS5A02G143400 , TraesCS2B02G119400 , TraesCS2B02G119400 , TraesCS2B02G119400 , TraesCS2B02G119400 , TraesCS4B02G124600 , TraesCS2A02G102300 , TraesCS2A02G102300 , TraesCS4B02G124600 , TraesCS2A02G102300 , TraesCS4D02G122500 , TraesCS4D02G122500 , TraesCS4D02G122500 , TraesCS4D02G122500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G041900 expressed protein -
2 Sobic.002G006100 phytosulfokine receptor precursor, putative, expressed -
3 Sobic.002G343000 expressed protein -
4 Sobic.008G022200 RNA-binding zinc finger protein, putative, expressed -
5 Sobic.009G002200 formin-like protein 1 precursor, putative, expressed -
6 Sobic.004G078500 Leucine Rich Repeat family protein, expressed -
7 Sobic.009G225500 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
8 Sobic.006G272800 Most C2 domain protein(PubMedID : 29491869)@anthranilate phosphoribosyltransferase, putative, expressed -
9 Sobic.003G290400 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
10 Sobic.003G259300 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
11 Sobic.010G275800 callose synthase-like enzyme(PubMedID : 25311645)@1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
12 Sobic.008G118100 kelch repeat protein, putative, expressed -
13 Sobic.004G242200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nucleobase-ascorbate transporter, putative, expressed -
14 Sobic.009G148000 anthranilate phosphoribosyltransferase, putative, expressed -
15 Sobic.002G027600 receptor protein kinase CLAVATA1 precursor, putative, expressed -
16 Sobic.001G123100 Os3bglu8 - beta-glucosidase, exo-beta-glucansase, high similarity to Os3bglu7, expressed K05350: beta-glucosidase
17 Sobic.007G106300 nucleobase-ascorbate transporter, putative, expressed K14611: SLC23A1, solute carrier family 23 (nucleobase transporter), member 1
18 Sobic.003G351900 fasciclin-like arabinogalactan protein, putative, expressed -
19 Sobic.004G286200 DUF630/DUF632 domains containing protein, putative, expressed -
20 Sobic.006G142500 protein kinase, putative, expressed -


Gene co-expression network
sample Sobic005G018050 Sobic005G018050 Sobic008G041900 Sobic008G041900 Sobic005G018050--Sobic008G041900 Sobic002G006100 Sobic002G006100 Sobic005G018050--Sobic002G006100 Sobic002G343000 Sobic002G343000 Sobic005G018050--Sobic002G343000 Sobic008G022200 Sobic008G022200 Sobic005G018050--Sobic008G022200 Sobic009G002200 Sobic009G002200 Sobic005G018050--Sobic009G002200 Sobic004G078500 Sobic004G078500 Sobic005G018050--Sobic004G078500 Sobic009G225500 Sobic009G225500 Sobic005G018050--Sobic009G225500 Sobic006G272800 Sobic006G272800 Sobic005G018050--Sobic006G272800 Sobic003G290400 Sobic003G290400 Sobic005G018050--Sobic003G290400 Sobic008G041900--Sobic005G018050 Sobic008G041900--Sobic002G343000 Sobic005G033700 Sobic005G033700 Sobic008G041900--Sobic005G033700 Sobic006G186300 Sobic006G186300 Sobic008G041900--Sobic006G186300 Sobic009G148000 Sobic009G148000 Sobic008G041900--Sobic009G148000 Sobic007G106300 Sobic007G106300 Sobic008G041900--Sobic007G106300 Sobic008G041900--Sobic006G272800 Sobic010G180200 Sobic010G180200 Sobic008G041900--Sobic010G180200 Sobic010G275800 Sobic010G275800 Sobic008G041900--Sobic010G275800 Sobic002G027600 Sobic002G027600 Sobic002G006100--Sobic002G027600 Sobic003G259300 Sobic003G259300 Sobic002G006100--Sobic003G259300 Sobic002G006100--Sobic006G272800 Sobic003G351900 Sobic003G351900 Sobic002G006100--Sobic003G351900 Sobic001G425700 Sobic001G425700 Sobic002G006100--Sobic001G425700 Sobic003G298900 Sobic003G298900 Sobic002G006100--Sobic003G298900 Sobic002G284100 Sobic002G284100 Sobic002G006100--Sobic002G284100 Sobic002G006100--Sobic004G078500 Sobic002G006100--Sobic009G225500 Sobic002G343000--Sobic009G148000 Sobic006G200901 Sobic006G200901 Sobic002G343000--Sobic006G200901 Sobic004G014100 Sobic004G014100 Sobic002G343000--Sobic004G014100 Sobic006G143300 Sobic006G143300 Sobic002G343000--Sobic006G143300 Sobic002G253900 Sobic002G253900 Sobic002G343000--Sobic002G253900 Sobic003G217500 Sobic003G217500 Sobic002G343000--Sobic003G217500 Sobic002G230400 Sobic002G230400 Sobic002G343000--Sobic002G230400 Sobic002G343000--Sobic008G041900 Sobic002G343000--Sobic006G186300 Sobic009G047000 Sobic009G047000 Sobic008G022200--Sobic009G047000 Sobic006G142500 Sobic006G142500 Sobic008G022200--Sobic006G142500 Sobic008G022200--Sobic005G018050 Sobic009G127800 Sobic009G127800 Sobic008G022200--Sobic009G127800 Sobic008G022200--Sobic006G272800 Sobic008G022200--Sobic009G225500 Sobic006G278000 Sobic006G278000 Sobic008G022200--Sobic006G278000 Sobic008G022200--Sobic010G275800 Sobic008G022200--Sobic002G284100 Sobic007G050800 Sobic007G050800 Sobic009G002200--Sobic007G050800 Sobic009G002200--Sobic003G290400 Sobic004G282601 Sobic004G282601 Sobic009G002200--Sobic004G282601 Sobic006G135800 Sobic006G135800 Sobic009G002200--Sobic006G135800 Sobic005G036200 Sobic005G036200 Sobic009G002200--Sobic005G036200 Sobic005G153000 Sobic005G153000 Sobic009G002200--Sobic005G153000 Sobic001G375800 Sobic001G375800 Sobic009G002200--Sobic001G375800 Sobic009G002200--Sobic004G078500 Sobic010G037901 Sobic010G037901 Sobic009G002200--Sobic010G037901 Sobic002G335500 Sobic002G335500 Sobic004G078500--Sobic002G335500 Sobic004G078500--Sobic002G006100 Sobic004G078500--Sobic009G002200 Sobic002G112000 Sobic002G112000 Sobic004G078500--Sobic002G112000 Sobic004G078500--Sobic005G018050 Sobic001G081800 Sobic001G081800 Sobic004G078500--Sobic001G081800 Sobic004G078500--Sobic003G259300 Sobic004G078500--Sobic003G290400 Sobic001G465500 Sobic001G465500 Sobic004G078500--Sobic001G465500 Sobic009G225500--Sobic009G127800 Sobic009G225500--Sobic003G259300 Sobic009G225500--Sobic006G142500 Sobic006G221300 Sobic006G221300 Sobic009G225500--Sobic006G221300 Sobic010G086000 Sobic010G086000 Sobic009G225500--Sobic010G086000 Sobic009G225500--Sobic001G425700 Sobic004G179800 Sobic004G179800 Sobic009G225500--Sobic004G179800 Sobic009G225500--Sobic006G272800 Sobic006G281900 Sobic006G281900 Sobic009G225500--Sobic006G281900 Sobic006G272800--Sobic002G284100 Sobic006G272800--Sobic002G027600 Sobic004G267600 Sobic004G267600 Sobic006G272800--Sobic004G267600 Sobic008G070700 Sobic008G070700 Sobic006G272800--Sobic008G070700 Sobic005G032600 Sobic005G032600 Sobic006G272800--Sobic005G032600 Sobic001G468000 Sobic001G468000 Sobic006G272800--Sobic001G468000 Sobic006G272800--Sobic002G006100 Sobic006G272800--Sobic006G142500 Sobic001G158300 Sobic001G158300 Sobic006G272800--Sobic001G158300 Sobic003G290400--Sobic005G153000 Sobic003G290400--Sobic009G002200 Sobic003G290400--Sobic004G282601 Sobic009G077300 Sobic009G077300 Sobic003G290400--Sobic009G077300 Sobic003G290400--Sobic006G221300 Sobic003G290400--Sobic002G027600 Sobic003G290400--Sobic006G135800 Sobic007G162400 Sobic007G162400 Sobic003G290400--Sobic007G162400 Sobic003G290400--Sobic003G259300
Octagon: transcription factors


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