Gene annotation
Transcriptome id Sobic.008G022200.1
Synonym Sb08g001980
Functional annotation RNA-binding zinc finger protein, putative, expressed
UniProt A0A1B6PAY5
Pfam PF00076 PF16131
Panther DB PTHR24009 PTHR24009:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G51950 : Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
RAP-DB (Rice) LOC_Os03g21140.2 : RNA-binding zinc finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a029001 , Zm00025a053753 , Zm00025a033343 , Zm00025a049183 , Zm00025a034583 , Zm00025a052452
Brachypodium KQK21862 , KQK21863 , KQK14595 , PNT74552 , PNT65530 , PNT77483
Barley HORVU5Hr1G045860.1 , HORVU5Hr1G045860.4 , HORVU5Hr1G045860.5 , HORVU2Hr1G017490.9 , HORVU2Hr1G017490.8 , HORVU2Hr1G017490.7 , HORVU2Hr1G017490.6 , HORVU2Hr1G017490.5 , HORVU2Hr1G017490.4 , HORVU2Hr1G017490.3 , HORVU2Hr1G017490.2 , HORVU5Hr1G045860.3 , HORVU2Hr1G017490.16 , HORVU2Hr1G017490.15 , HORVU2Hr1G017490.14 , HORVU2Hr1G017490.13 , HORVU2Hr1G017490.12 , HORVU2Hr1G017490.11 , HORVU2Hr1G017490.10 , HORVU5Hr1G045860.10 , HORVU5Hr1G045860.11 , HORVU5Hr1G045860.12 , HORVU5Hr1G045860.13 , HORVU5Hr1G045860.6 , HORVU5Hr1G045860.7 , HORVU5Hr1G045860.2 , HORVU5Hr1G045860.8 , HORVU5Hr1G045860.9
Wheat TraesCS2D02G101800 , TraesCS2D02G101800 , TraesCS2D02G101800 , TraesCS2D02G101800 , TraesCS2D02G101800 , TraesCS5B02G142300 , TraesCS5B02G142300 , TraesCS5B02G142300 , TraesCS5B02G142300 , TraesCS4A02G190800 , TraesCS2A02G102300 , TraesCS4A02G190800 , TraesCS5D02G148600 , TraesCS5D02G148600 , TraesCS5A02G143400 , TraesCS5A02G143400 , TraesCS5A02G143400 , TraesCS2B02G119400 , TraesCS2B02G119400 , TraesCS2B02G119400 , TraesCS2B02G119400 , TraesCS4B02G124600 , TraesCS2A02G102300 , TraesCS2A02G102300 , TraesCS4B02G124600 , TraesCS2A02G102300 , TraesCS4D02G122500 , TraesCS4D02G122500 , TraesCS4D02G122500 , TraesCS4D02G122500
Populus -


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cDNA sequences
Sobic.008G022200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G047000 E3 ubiquitin-protein ligase SINA-like 2, putative, expressed K04506: E3 ubiquitin-protein ligase SIAH1
2 Sobic.006G142500 protein kinase, putative, expressed -
3 Sobic.005G018050 - -
4 Sobic.009G127800 BZIP protein, putative, expressed -
5 Sobic.006G272800 Most C2 domain protein(PubMedID : 29491869)@anthranilate phosphoribosyltransferase, putative, expressed -
6 Sobic.009G225500 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
7 Sobic.006G278000 protein kinase domain containing protein, expressed -
8 Sobic.010G275800 callose synthase-like enzyme(PubMedID : 25311645)@1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
9 Sobic.002G284100 ATROPGEF7/ROPGEF7, putative, expressed -
10 Sobic.002G279400 DUF630/DUF632 domains containing protein, putative, expressed -
11 Sobic.004G267600 OsFBT4 - F-box and tubby domain containing protein, expressed -
12 Sobic.002G027600 receptor protein kinase CLAVATA1 precursor, putative, expressed -
13 Sobic.008G041900 expressed protein -
14 Sobic.010G192500 anthranilate phosphoribosyltransferase, putative, expressed -
15 Sobic.002G006100 phytosulfokine receptor precursor, putative, expressed -
16 Sobic.005G157300 protein binding protein, putative, expressed -
17 Sobic.001G158300 SNF7 domain containing protein, putative, expressed K12191: charged multivesicular body protein 2A
18 Sobic.010G086000 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
19 Sobic.003G259300 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
20 Sobic.003G072500 transcription factor X1, putative, expressed -


Gene co-expression network
sample Sobic008G022200 Sobic008G022200 Sobic009G047000 Sobic009G047000 Sobic008G022200--Sobic009G047000 Sobic006G142500 Sobic006G142500 Sobic008G022200--Sobic006G142500 Sobic005G018050 Sobic005G018050 Sobic008G022200--Sobic005G018050 Sobic009G127800 Sobic009G127800 Sobic008G022200--Sobic009G127800 Sobic006G272800 Sobic006G272800 Sobic008G022200--Sobic006G272800 Sobic009G225500 Sobic009G225500 Sobic008G022200--Sobic009G225500 Sobic006G278000 Sobic006G278000 Sobic008G022200--Sobic006G278000 Sobic010G275800 Sobic010G275800 Sobic008G022200--Sobic010G275800 Sobic002G284100 Sobic002G284100 Sobic008G022200--Sobic002G284100 Sobic009G047000--Sobic006G142500 Sobic004G267600 Sobic004G267600 Sobic009G047000--Sobic004G267600 Sobic010G192500 Sobic010G192500 Sobic009G047000--Sobic010G192500 Sobic004G179800 Sobic004G179800 Sobic009G047000--Sobic004G179800 Sobic010G086000 Sobic010G086000 Sobic009G047000--Sobic010G086000 Sobic002G417000 Sobic002G417000 Sobic009G047000--Sobic002G417000 Sobic010G024500 Sobic010G024500 Sobic009G047000--Sobic010G024500 Sobic009G202801 Sobic009G202801 Sobic009G047000--Sobic009G202801 Sobic003G292700 Sobic003G292700 Sobic009G047000--Sobic003G292700 Sobic006G142500--Sobic010G086000 Sobic006G142500--Sobic004G267600 Sobic006G142500--Sobic010G192500 Sobic006G142500--Sobic009G225500 Sobic003G032200 Sobic003G032200 Sobic006G142500--Sobic003G032200 Sobic004G234500 Sobic004G234500 Sobic006G142500--Sobic004G234500 Sobic006G142500--Sobic009G127800 Sobic006G142500--Sobic009G047000 Sobic001G390400 Sobic001G390400 Sobic006G142500--Sobic001G390400 Sobic008G041900 Sobic008G041900 Sobic005G018050--Sobic008G041900 Sobic002G006100 Sobic002G006100 Sobic005G018050--Sobic002G006100 Sobic002G343000 Sobic002G343000 Sobic005G018050--Sobic002G343000 Sobic005G018050--Sobic008G022200 Sobic009G002200 Sobic009G002200 Sobic005G018050--Sobic009G002200 Sobic004G078500 Sobic004G078500 Sobic005G018050--Sobic004G078500 Sobic005G018050--Sobic009G225500 Sobic005G018050--Sobic006G272800 Sobic003G290400 Sobic003G290400 Sobic005G018050--Sobic003G290400 Sobic006G221300 Sobic006G221300 Sobic009G127800--Sobic006G221300 Sobic009G127800--Sobic009G225500 Sobic001G054700 Sobic001G054700 Sobic009G127800--Sobic001G054700 Sobic009G127800--Sobic006G142500 Sobic008G052300 Sobic008G052300 Sobic009G127800--Sobic008G052300 Sobic002G279400 Sobic002G279400 Sobic009G127800--Sobic002G279400 Sobic007G162400 Sobic007G162400 Sobic009G127800--Sobic007G162400 Sobic002G027600 Sobic002G027600 Sobic009G127800--Sobic002G027600 Sobic005G157300 Sobic005G157300 Sobic009G127800--Sobic005G157300 Sobic006G272800--Sobic002G284100 Sobic006G272800--Sobic002G027600 Sobic006G272800--Sobic004G267600 Sobic008G070700 Sobic008G070700 Sobic006G272800--Sobic008G070700 Sobic005G032600 Sobic005G032600 Sobic006G272800--Sobic005G032600 Sobic001G468000 Sobic001G468000 Sobic006G272800--Sobic001G468000 Sobic006G272800--Sobic002G006100 Sobic006G272800--Sobic006G142500 Sobic001G158300 Sobic001G158300 Sobic006G272800--Sobic001G158300 Sobic009G225500--Sobic009G127800 Sobic003G259300 Sobic003G259300 Sobic009G225500--Sobic003G259300 Sobic009G225500--Sobic006G142500 Sobic009G225500--Sobic006G221300 Sobic009G225500--Sobic010G086000 Sobic001G425700 Sobic001G425700 Sobic009G225500--Sobic001G425700 Sobic009G225500--Sobic004G179800 Sobic009G225500--Sobic006G272800 Sobic006G281900 Sobic006G281900 Sobic009G225500--Sobic006G281900 Sobic006G278000--Sobic008G022200 Sobic006G278000--Sobic006G142500 Sobic006G278000--Sobic009G047000 Sobic006G278000--Sobic004G267600 Sobic003G055600 Sobic003G055600 Sobic006G278000--Sobic003G055600 Sobic008G160400 Sobic008G160400 Sobic006G278000--Sobic008G160400 Sobic006G278000--Sobic003G292700 Sobic006G278000--Sobic009G202801 Sobic006G278000--Sobic009G127800 Sobic010G275800--Sobic010G192500 Sobic010G275800--Sobic005G032600 Sobic010G275800--Sobic004G179800 Sobic002G315500 Sobic002G315500 Sobic010G275800--Sobic002G315500 Sobic010G275800--Sobic009G225500 Sobic002G335900 Sobic002G335900 Sobic010G275800--Sobic002G335900 Sobic010G275800--Sobic006G142500 Sobic010G275800--Sobic002G027600 Sobic002G337600 Sobic002G337600 Sobic010G275800--Sobic002G337600 Sobic002G284100--Sobic006G272800 Sobic002G284100--Sobic004G267600 Sobic002G284100--Sobic002G027600 Sobic001G369800 Sobic001G369800 Sobic002G284100--Sobic001G369800 Sobic001G123100 Sobic001G123100 Sobic002G284100--Sobic001G123100 Sobic001G540700 Sobic001G540700 Sobic002G284100--Sobic001G540700 Sobic002G284100--Sobic010G086000 Sobic009G172950 Sobic009G172950 Sobic002G284100--Sobic009G172950 Sobic002G284100--Sobic006G142500
Octagon: transcription factors


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