Gene annotation
Transcriptome id Sobic.009G047000.1
Synonym Sb09g004040
Functional annotation E3 ubiquitin-protein ligase SINA-like 2, putative, expressed
UniProt C5Z065
Pfam PF03145
Panther DB PTHR10315 PTHR10315:SF35
NCBI CDD -
KEGG Orthology K04506; E3 ubiquitin-protein ligase SIAH1
Gene Ontology GO:0007275; multicellular organism development GO:0006511ubiquitin-dependent protein catabolic process GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT5G37870 : Protein with RING/U-box and TRAF-like domains
RAP-DB (Rice) LOC_Os05g06060.1 : E3 ubiquitin-protein ligase SINA-like 2, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G142500 protein kinase, putative, expressed -
2 Sobic.004G267600 OsFBT4 - F-box and tubby domain containing protein, expressed -
3 Sobic.010G192500 anthranilate phosphoribosyltransferase, putative, expressed -
4 Sobic.004G179800 expressed protein -
5 Sobic.010G086000 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
6 Sobic.002G417000 expressed protein -
7 Sobic.010G024500 expressed protein -
8 Sobic.009G202801 - K10406: kinesin family member C2/C3
9 Sobic.003G292700 kinesin motor protein-related, putative, expressed K10406: kinesin family member C2/C3
10 Sobic.008G022200 RNA-binding zinc finger protein, putative, expressed -
11 Sobic.010G241100 thaumatin family domain containing protein, expressed -
12 Sobic.001G493900 beta-galactosidase, putative, expressed -
13 Sobic.002G284100 ATROPGEF7/ROPGEF7, putative, expressed -
14 Sobic.003G031700 protein kinase family protein, putative, expressed -
15 Sobic.007G160300 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
16 Sobic.004G164700 expressed protein -
17 Sobic.005G032600 glucan endo-1,3-beta-glucosidase-related, putative, expressed -
18 Sobic.001G054700 seed specific protein Bn15D14A, putative, expressed -
19 Sobic.001G390400 expressed protein -
20 Sobic.008G190000 leucine-rich repeat family protein, putative, expressed -


Gene co-expression network
sample Sobic009G047000 Sobic009G047000 Sobic006G142500 Sobic006G142500 Sobic009G047000--Sobic006G142500 Sobic004G267600 Sobic004G267600 Sobic009G047000--Sobic004G267600 Sobic010G192500 Sobic010G192500 Sobic009G047000--Sobic010G192500 Sobic004G179800 Sobic004G179800 Sobic009G047000--Sobic004G179800 Sobic010G086000 Sobic010G086000 Sobic009G047000--Sobic010G086000 Sobic002G417000 Sobic002G417000 Sobic009G047000--Sobic002G417000 Sobic010G024500 Sobic010G024500 Sobic009G047000--Sobic010G024500 Sobic009G202801 Sobic009G202801 Sobic009G047000--Sobic009G202801 Sobic003G292700 Sobic003G292700 Sobic009G047000--Sobic003G292700 Sobic006G142500--Sobic010G086000 Sobic006G142500--Sobic004G267600 Sobic006G142500--Sobic010G192500 Sobic009G225500 Sobic009G225500 Sobic006G142500--Sobic009G225500 Sobic003G032200 Sobic003G032200 Sobic006G142500--Sobic003G032200 Sobic004G234500 Sobic004G234500 Sobic006G142500--Sobic004G234500 Sobic009G127800 Sobic009G127800 Sobic006G142500--Sobic009G127800 Sobic006G142500--Sobic009G047000 Sobic001G390400 Sobic001G390400 Sobic006G142500--Sobic001G390400 Sobic001G493900 Sobic001G493900 Sobic004G267600--Sobic001G493900 Sobic002G284100 Sobic002G284100 Sobic004G267600--Sobic002G284100 Sobic010G129700 Sobic010G129700 Sobic004G267600--Sobic010G129700 Sobic004G267600--Sobic006G142500 Sobic002G027600 Sobic002G027600 Sobic004G267600--Sobic002G027600 Sobic006G272800 Sobic006G272800 Sobic004G267600--Sobic006G272800 Sobic004G267600--Sobic002G417000 Sobic005G032600 Sobic005G032600 Sobic004G267600--Sobic005G032600 Sobic005G062600 Sobic005G062600 Sobic004G267600--Sobic005G062600 Sobic009G060800 Sobic009G060800 Sobic010G192500--Sobic009G060800 Sobic003G089300 Sobic003G089300 Sobic010G192500--Sobic003G089300 Sobic002G337600 Sobic002G337600 Sobic010G192500--Sobic002G337600 Sobic003G366000 Sobic003G366000 Sobic010G192500--Sobic003G366000 Sobic010G241100 Sobic010G241100 Sobic010G192500--Sobic010G241100 Sobic001G155700 Sobic001G155700 Sobic010G192500--Sobic001G155700 Sobic010G192500--Sobic001G493900 Sobic002G319300 Sobic002G319300 Sobic010G192500--Sobic002G319300 Sobic009G208300 Sobic009G208300 Sobic010G192500--Sobic009G208300 Sobic004G179800--Sobic006G142500 Sobic004G179800--Sobic010G024500 Sobic008G190000 Sobic008G190000 Sobic004G179800--Sobic008G190000 Sobic004G179800--Sobic009G225500 Sobic004G179800--Sobic010G192500 Sobic005G163400 Sobic005G163400 Sobic004G179800--Sobic005G163400 Sobic003G104100 Sobic003G104100 Sobic004G179800--Sobic003G104100 Sobic004G179800--Sobic009G047000 Sobic004G179800--Sobic003G366000 Sobic010G086000--Sobic006G142500 Sobic010G086000--Sobic003G032200 Sobic010G086000--Sobic010G241100 Sobic001G452900 Sobic001G452900 Sobic010G086000--Sobic001G452900 Sobic010G086000--Sobic010G192500 Sobic010G086000--Sobic004G234500 Sobic010G086000--Sobic004G267600 Sobic010G086000--Sobic002G284100 Sobic001G054700 Sobic001G054700 Sobic010G086000--Sobic001G054700 Sobic002G360500 Sobic002G360500 Sobic002G417000--Sobic002G360500 Sobic002G417000--Sobic001G493900 Sobic002G417000--Sobic004G267600 Sobic003G307200 Sobic003G307200 Sobic002G417000--Sobic003G307200 Sobic008G114900 Sobic008G114900 Sobic002G417000--Sobic008G114900 Sobic010G211800 Sobic010G211800 Sobic002G417000--Sobic010G211800 Sobic002G417000--Sobic010G192500 Sobic002G074000 Sobic002G074000 Sobic002G417000--Sobic002G074000 Sobic006G221800 Sobic006G221800 Sobic002G417000--Sobic006G221800 Sobic010G024500--Sobic005G163400 Sobic010G024500--Sobic008G190000 Sobic010G024500--Sobic001G390400 Sobic006G241800 Sobic006G241800 Sobic010G024500--Sobic006G241800 Sobic008G083500 Sobic008G083500 Sobic010G024500--Sobic008G083500 Sobic001G381100 Sobic001G381100 Sobic010G024500--Sobic001G381100 Sobic010G024500--Sobic002G319300 Sobic010G024500--Sobic010G192500 Sobic004G164700 Sobic004G164700 Sobic010G024500--Sobic004G164700 Sobic009G202801--Sobic003G292700 Sobic006G193100 Sobic006G193100 Sobic009G202801--Sobic006G193100 Sobic003G031700 Sobic003G031700 Sobic009G202801--Sobic003G031700 Sobic003G315700 Sobic003G315700 Sobic009G202801--Sobic003G315700 Sobic009G202801--Sobic006G142500 Sobic001G008300 Sobic001G008300 Sobic009G202801--Sobic001G008300 Sobic009G202801--Sobic002G074000 Sobic002G317700 Sobic002G317700 Sobic009G202801--Sobic002G317700 Sobic004G246500 Sobic004G246500 Sobic009G202801--Sobic004G246500 Sobic003G420300 Sobic003G420300 Sobic003G292700--Sobic003G420300 Sobic003G226700 Sobic003G226700 Sobic003G292700--Sobic003G226700 Sobic003G292700--Sobic009G202801 Sobic003G292700--Sobic001G054700 Sobic003G292700--Sobic006G142500 Sobic003G292700--Sobic003G032200 Sobic001G377700 Sobic001G377700 Sobic003G292700--Sobic001G377700 Sobic002G021200 Sobic002G021200 Sobic003G292700--Sobic002G021200 Sobic003G292700--Sobic008G083500
Octagon: transcription factors


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