Gene annotation
Transcriptome id Sobic.005G033700.3,Sobic.005G033700.2,Sobic.005G033700.1
Synonym
Functional annotation heavy-metal-associated domain-containing protein, putative, expressed
UniProt A0A1B6PPY7
Pfam PF00403
Panther DB PTHR22814 PTHR22814:SF33
NCBI CDD KOG1603; Copper chaperone
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G19090 : Heavy metal transport/detoxification superfamily protein
RAP-DB (Rice) LOC_Os12g05040.6,LOC_Os12g05040.3 : heavy-metal-associated domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a013034
Brachypodium -
Barley HORVU5Hr1G040920.2
Wheat TraesCS5B02G131600 , TraesCS5A02G133900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.005G033700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G143300 nuclear transport factor 2, putative, expressed -
2 Sobic.002G122000 - -
3 Sobic.006G186300 fasciclin-like arabinogalactan protein, putative, expressed -
4 Sobic.008G041900 expressed protein -
5 Sobic.001G081800 GASR3 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
6 Sobic.001G171100 expressed protein -
7 Sobic.006G200901 - -
8 Sobic.002G343000 expressed protein -
9 Sobic.003G029900 cytokinin dehydrogenase precursor, putative, expressed K00279: cytokinin dehydrogenase
10 Sobic.001G377600 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
11 Sobic.009G148000 anthranilate phosphoribosyltransferase, putative, expressed -
12 Sobic.002G230400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
13 Sobic.010G067200 receptor-like protein kinase precursor, putative, expressed -
14 Sobic.001G437300 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed -
15 Sobic.007G128400 expressed protein -
16 Sobic.010G180200 transcription factor S-II, central domain containing protein, expressed -
17 Sobic.005G164800 pumilio-family RNA binding repeat domain containing protein, expressed -
18 Sobic.005G131800 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1
19 Sobic.010G193700 expressed protein -
20 Sobic.001G183100 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant


Gene co-expression network
sample Sobic005G033700 Sobic005G033700 Sobic006G143300 Sobic006G143300 Sobic005G033700--Sobic006G143300 Sobic002G122000 Sobic002G122000 Sobic005G033700--Sobic002G122000 Sobic006G186300 Sobic006G186300 Sobic005G033700--Sobic006G186300 Sobic008G041900 Sobic008G041900 Sobic005G033700--Sobic008G041900 Sobic001G081800 Sobic001G081800 Sobic005G033700--Sobic001G081800 Sobic001G171100 Sobic001G171100 Sobic005G033700--Sobic001G171100 Sobic006G200901 Sobic006G200901 Sobic005G033700--Sobic006G200901 Sobic002G343000 Sobic002G343000 Sobic005G033700--Sobic002G343000 Sobic003G029900 Sobic003G029900 Sobic005G033700--Sobic003G029900 Sobic006G143300--Sobic005G033700 Sobic006G143300--Sobic006G200901 Sobic006G143300--Sobic002G343000 Sobic004G014100 Sobic004G014100 Sobic006G143300--Sobic004G014100 Sobic006G143300--Sobic001G081800 Sobic002G349000 Sobic002G349000 Sobic006G143300--Sobic002G349000 Sobic002G230400 Sobic002G230400 Sobic006G143300--Sobic002G230400 Sobic005G164800 Sobic005G164800 Sobic006G143300--Sobic005G164800 Sobic006G143300--Sobic006G186300 Sobic002G122000--Sobic006G186300 Sobic007G128400 Sobic007G128400 Sobic002G122000--Sobic007G128400 Sobic002G122000--Sobic005G033700 Sobic004G038900 Sobic004G038900 Sobic002G122000--Sobic004G038900 Sobic002G122000--Sobic003G029900 Sobic010G067200 Sobic010G067200 Sobic002G122000--Sobic010G067200 Sobic010G047300 Sobic010G047300 Sobic002G122000--Sobic010G047300 Sobic005G171800 Sobic005G171800 Sobic002G122000--Sobic005G171800 Sobic010G133150 Sobic010G133150 Sobic002G122000--Sobic010G133150 Sobic006G186300--Sobic010G047300 Sobic007G041200 Sobic007G041200 Sobic006G186300--Sobic007G041200 Sobic006G186300--Sobic002G122000 Sobic004G075700 Sobic004G075700 Sobic006G186300--Sobic004G075700 Sobic006G186300--Sobic002G230400 Sobic010G084800 Sobic010G084800 Sobic006G186300--Sobic010G084800 Sobic001G305100 Sobic001G305100 Sobic006G186300--Sobic001G305100 Sobic005G131800 Sobic005G131800 Sobic006G186300--Sobic005G131800 Sobic006G186300--Sobic005G171800 Sobic005G018050 Sobic005G018050 Sobic008G041900--Sobic005G018050 Sobic008G041900--Sobic002G343000 Sobic008G041900--Sobic005G033700 Sobic008G041900--Sobic006G186300 Sobic009G148000 Sobic009G148000 Sobic008G041900--Sobic009G148000 Sobic007G106300 Sobic007G106300 Sobic008G041900--Sobic007G106300 Sobic006G272800 Sobic006G272800 Sobic008G041900--Sobic006G272800 Sobic010G180200 Sobic010G180200 Sobic008G041900--Sobic010G180200 Sobic010G275800 Sobic010G275800 Sobic008G041900--Sobic010G275800 Sobic002G238800 Sobic002G238800 Sobic001G081800--Sobic002G238800 Sobic001G081800--Sobic006G143300 Sobic002G335500 Sobic002G335500 Sobic001G081800--Sobic002G335500 Sobic002G354800 Sobic002G354800 Sobic001G081800--Sobic002G354800 Sobic001G081800--Sobic005G164800 Sobic001G081800--Sobic002G343000 Sobic001G081800--Sobic001G171100 Sobic001G081800--Sobic005G033700 Sobic003G379900 Sobic003G379900 Sobic001G081800--Sobic003G379900 Sobic010G212700 Sobic010G212700 Sobic001G171100--Sobic010G212700 Sobic003G022900 Sobic003G022900 Sobic001G171100--Sobic003G022900 Sobic001G377600 Sobic001G377600 Sobic001G171100--Sobic001G377600 Sobic008G072900 Sobic008G072900 Sobic001G171100--Sobic008G072900 Sobic003G027200 Sobic003G027200 Sobic001G171100--Sobic003G027200 Sobic001G171100--Sobic005G164800 Sobic001G171100--Sobic003G029900 Sobic001G171200 Sobic001G171200 Sobic001G171100--Sobic001G171200 Sobic006G097300 Sobic006G097300 Sobic001G171100--Sobic006G097300 Sobic006G200901--Sobic002G343000 Sobic006G200901--Sobic006G143300 Sobic006G200901--Sobic004G014100 Sobic006G200901--Sobic009G148000 Sobic002G253900 Sobic002G253900 Sobic006G200901--Sobic002G253900 Sobic003G217500 Sobic003G217500 Sobic006G200901--Sobic003G217500 Sobic006G200901--Sobic006G186300 Sobic006G200901--Sobic002G230400 Sobic006G200901--Sobic004G075700 Sobic002G343000--Sobic009G148000 Sobic002G343000--Sobic006G200901 Sobic002G343000--Sobic004G014100 Sobic002G343000--Sobic006G143300 Sobic002G343000--Sobic002G253900 Sobic002G343000--Sobic003G217500 Sobic002G343000--Sobic002G230400 Sobic002G343000--Sobic008G041900 Sobic002G343000--Sobic006G186300 Sobic003G029900--Sobic001G377600 Sobic003G029900--Sobic008G072900 Sobic003G029900--Sobic003G027200 Sobic004G294600 Sobic004G294600 Sobic003G029900--Sobic004G294600 Sobic003G029900--Sobic001G171100 Sobic003G029900--Sobic010G067200 Sobic003G029900--Sobic007G128400 Sobic003G029900--Sobic003G022900 Sobic006G250200 Sobic006G250200 Sobic003G029900--Sobic006G250200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.