Gene annotation
Transcriptome id Sobic.004G217800.1
Synonym 1, ATAMT1, AMT1, Sb04g026290
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ammonium transporter protein, putative, expressed
UniProt C5XXR3
Pfam PF00909
Panther DB PTHR11730 PTHR11730:SF40
NCBI CDD -
KEGG Orthology K03320; amt, AMT, ammonium transporter, Amt family
Gene Ontology GO:0016020; membrane GO:0015696ammonium transport GO:0008519ammonium transmembrane transporter activity


Orthologs (automatic annotation)
TAIR AT4G13510 : ammonium transporter 1;1
RAP-DB (Rice) LOC_Os02g40730.1 : ammonium transporter protein, putative, expressed
MaizeGDB (Corn) Zm00025a021129 , Zm00025a056484 , Zm00025a010662
Brachypodium KQK00374 , KQJ83515
Barley HORVU2Hr1G088420.2 , HORVU2Hr1G088420.3 , HORVU2Hr1G088420.6 , HORVU2Hr1G088420.4 , HORVU2Hr1G088420.5 , HORVU2Hr1G088410.6 , HORVU2Hr1G088380.1 , HORVU6Hr1G057870.1 , HORVU6Hr1G057870.2
Wheat -
Populus PNT25211


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G249300 expressed protein -
2 Sobic.001G449600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Oxygen binding /transporter (Zm)(PubMedID : 27208977)@Oxygen binding /transporter (Zm)(PubMedID : 27208977)@non-symbiotic hemoglobin 2, putative, expressed -
3 Sobic.009G016300 ZOS5-02 - C2H2 zinc finger protein, expressed -
4 Sobic.003G255200 expressed protein -
5 Sobic.007G057000 expressed protein -
6 Sobic.010G136000 expressed protein -
7 Sobic.009G183400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
8 Sobic.003G062600 limonoid UDP-glucosyltransferase, putative, expressed -
9 Sobic.001G476500 helix-loop-helix DNA-binding protein, putative, expressed -
10 Sobic.002G057900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed K03671: thioredoxin 1
11 Sobic.004G107700 expressed protein -
12 Sobic.006G092500 expressed protein -
13 Sobic.006G199800 Orthologous gene to AtMYB58 and AtMYB63(PubMedID : 26712107)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
14 Sobic.002G034800 - -
15 Sobic.006G127900 helix-loop-helix DNA-binding domain containing protein, expressed -
16 Sobic.009G217700 - -
17 Sobic.010G259600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Os)(PubMedID : 27208977)@transferase family protein, putative, expressed -
18 Sobic.001G309600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type, domain containing protein, expressed -
19 Sobic.007G015600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@- -
20 Sobic.001G325000 expressed protein -


Gene co-expression network
sample Sobic004G217800 Sobic004G217800 Sobic006G249300 Sobic006G249300 Sobic004G217800--Sobic006G249300 Sobic001G449600 Sobic001G449600 Sobic004G217800--Sobic001G449600 Sobic009G016300 Sobic009G016300 Sobic004G217800--Sobic009G016300 Sobic003G255200 Sobic003G255200 Sobic004G217800--Sobic003G255200 Sobic007G057000 Sobic007G057000 Sobic004G217800--Sobic007G057000 Sobic010G136000 Sobic010G136000 Sobic004G217800--Sobic010G136000 Sobic009G183400 Sobic009G183400 Sobic004G217800--Sobic009G183400 Sobic003G062600 Sobic003G062600 Sobic004G217800--Sobic003G062600 Sobic001G476500 Sobic001G476500 Sobic004G217800--Sobic001G476500 Sobic001G139100 Sobic001G139100 Sobic006G249300--Sobic001G139100 Sobic001G169500 Sobic001G169500 Sobic006G249300--Sobic001G169500 Sobic004G100700 Sobic004G100700 Sobic006G249300--Sobic004G100700 Sobic008G186100 Sobic008G186100 Sobic006G249300--Sobic008G186100 Sobic005G011300 Sobic005G011300 Sobic006G249300--Sobic005G011300 Sobic003G086600 Sobic003G086600 Sobic006G249300--Sobic003G086600 Sobic010G259600 Sobic010G259600 Sobic006G249300--Sobic010G259600 Sobic003G084400 Sobic003G084400 Sobic006G249300--Sobic003G084400 Sobic006G249300--Sobic009G183400 Sobic009G217700 Sobic009G217700 Sobic001G449600--Sobic009G217700 Sobic001G449600--Sobic003G255200 Sobic005G005600 Sobic005G005600 Sobic001G449600--Sobic005G005600 Sobic003G319700 Sobic003G319700 Sobic001G449600--Sobic003G319700 Sobic007G166000 Sobic007G166000 Sobic001G449600--Sobic007G166000 Sobic002G125700 Sobic002G125700 Sobic001G449600--Sobic002G125700 Sobic002G034800 Sobic002G034800 Sobic001G449600--Sobic002G034800 Sobic003G255500 Sobic003G255500 Sobic001G449600--Sobic003G255500 Sobic001G449600--Sobic009G016300 Sobic009G016300--Sobic001G449600 Sobic006G199800 Sobic006G199800 Sobic009G016300--Sobic006G199800 Sobic009G016300--Sobic003G255500 Sobic009G016300--Sobic003G062600 Sobic009G016300--Sobic003G255200 Sobic009G016300--Sobic004G217800 Sobic003G437200 Sobic003G437200 Sobic009G016300--Sobic003G437200 Sobic009G016300--Sobic009G217700 Sobic003G417800 Sobic003G417800 Sobic009G016300--Sobic003G417800 Sobic004G107700 Sobic004G107700 Sobic003G255200--Sobic004G107700 Sobic003G255200--Sobic002G125700 Sobic008G172600 Sobic008G172600 Sobic003G255200--Sobic008G172600 Sobic004G046200 Sobic004G046200 Sobic003G255200--Sobic004G046200 Sobic003G255200--Sobic010G259600 Sobic003G255200--Sobic001G449600 Sobic007G087200 Sobic007G087200 Sobic003G255200--Sobic007G087200 Sobic001G503100 Sobic001G503100 Sobic003G255200--Sobic001G503100 Sobic003G255200--Sobic002G034800 Sobic010G066700 Sobic010G066700 Sobic007G057000--Sobic010G066700 Sobic002G188900 Sobic002G188900 Sobic007G057000--Sobic002G188900 Sobic007G057000--Sobic009G183400 Sobic004G304625 Sobic004G304625 Sobic007G057000--Sobic004G304625 Sobic001G119400 Sobic001G119400 Sobic007G057000--Sobic001G119400 Sobic007G155100 Sobic007G155100 Sobic007G057000--Sobic007G155100 Sobic001G423800 Sobic001G423800 Sobic007G057000--Sobic001G423800 Sobic003G033900 Sobic003G033900 Sobic007G057000--Sobic003G033900 Sobic007G057000--Sobic004G100700 Sobic010G136000--Sobic010G066700 Sobic007G025500 Sobic007G025500 Sobic010G136000--Sobic007G025500 Sobic010G136000--Sobic009G183400 Sobic003G320800 Sobic003G320800 Sobic010G136000--Sobic003G320800 Sobic010G136000--Sobic007G057000 Sobic004G340900 Sobic004G340900 Sobic010G136000--Sobic004G340900 Sobic001G038900 Sobic001G038900 Sobic010G136000--Sobic001G038900 Sobic004G259366 Sobic004G259366 Sobic010G136000--Sobic004G259366 Sobic010G136000--Sobic002G188900 Sobic009G183400--Sobic001G476500 Sobic009G183400--Sobic001G119400 Sobic006G092500 Sobic006G092500 Sobic009G183400--Sobic006G092500 Sobic009G183400--Sobic001G038900 Sobic001G097600 Sobic001G097600 Sobic009G183400--Sobic001G097600 Sobic009G061200 Sobic009G061200 Sobic009G183400--Sobic009G061200 Sobic002G414600 Sobic002G414600 Sobic009G183400--Sobic002G414600 Sobic009G183400--Sobic004G100700 Sobic001G140900 Sobic001G140900 Sobic009G183400--Sobic001G140900 Sobic003G062600--Sobic003G417800 Sobic003G062600--Sobic003G437200 Sobic003G062600--Sobic001G119400 Sobic003G062600--Sobic004G107700 Sobic003G062600--Sobic009G183400 Sobic006G044100 Sobic006G044100 Sobic003G062600--Sobic006G044100 Sobic005G183100 Sobic005G183100 Sobic003G062600--Sobic005G183100 Sobic003G062600--Sobic003G255200 Sobic004G176600 Sobic004G176600 Sobic003G062600--Sobic004G176600 Sobic001G476500--Sobic006G092500 Sobic001G476500--Sobic009G183400 Sobic001G476500--Sobic003G417800 Sobic002G287100 Sobic002G287100 Sobic001G476500--Sobic002G287100 Sobic001G476500--Sobic004G100700 Sobic009G240600 Sobic009G240600 Sobic001G476500--Sobic009G240600 Sobic001G476500--Sobic001G119400 Sobic001G476500--Sobic003G033900 Sobic001G500000 Sobic001G500000 Sobic001G476500--Sobic001G500000
Octagon: transcription factors


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