Gene annotation
Transcriptome id Sobic.001G082600.2,Sobic.001G082600.3,Sobic.001G082600.4,Sobic.001G082600.1
Synonym Sb01g007440
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
bHelix-loop-helix transcription factor, putative, expressed
UniProt A0A1Z5S5B5 , A0A1Z5S562 , C5X062
Pfam -
Panther DB PTHR16223 PTHR16223:SF17
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G19500 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os03g55220.1,LOC_Os03g55220.2 : bHelix-loop-helix transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a008241 , Zm00025a016761
Brachypodium -
Barley -
Wheat TraesCS5B02G402200 , TraesCS5A02G397200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G079400 Ser/Thr protein kinase, putative, expressed -
2 Sobic.004G046200 sulfotransferase domain containing protein, expressed -
3 Sobic.006G044100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -
4 Sobic.003G011600 3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed K00606: 3-methyl-2-oxobutanoate hydroxymethyltransferase
5 Sobic.003G255200 expressed protein -
6 Sobic.007G215900 OsWAK73 - OsWAK receptor-like protein kinase, expressed -
7 Sobic.008G106700 isoflavone reductase, putative, expressed -
8 Sobic.004G176600 no apical meristem protein, putative, expressed -
9 Sobic.009G179900 OsCML9 - Calmodulin-related calcium sensor protein, expressed K02183: calmodulin
10 Sobic.005G168800 DJ-1 family protein, putative, expressed K18881: D-lactate dehydratase
11 Sobic.001G147900 cytochrome P450, putative, expressed -
12 Sobic.002G125700 similar to Aquaporin PIP2-6(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09872: aquaporin PIP
13 Sobic.001G139100 expressed protein -
14 Sobic.001G476500 helix-loop-helix DNA-binding protein, putative, expressed -
15 Sobic.006G092500 expressed protein -
16 Sobic.006G199800 Orthologous gene to AtMYB58 and AtMYB63(PubMedID : 26712107)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.003G255500 expressed protein -
18 Sobic.003G416300 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
19 Sobic.002G318100 expressed protein -
20 Sobic.005G084600 ARGOS, putative, expressed -


Gene co-expression network
sample Sobic001G082600 Sobic001G082600 Sobic003G079400 Sobic003G079400 Sobic001G082600--Sobic003G079400 Sobic004G046200 Sobic004G046200 Sobic001G082600--Sobic004G046200 Sobic006G044100 Sobic006G044100 Sobic001G082600--Sobic006G044100 Sobic003G011600 Sobic003G011600 Sobic001G082600--Sobic003G011600 Sobic003G255200 Sobic003G255200 Sobic001G082600--Sobic003G255200 Sobic007G215900 Sobic007G215900 Sobic001G082600--Sobic007G215900 Sobic008G106700 Sobic008G106700 Sobic001G082600--Sobic008G106700 Sobic004G176600 Sobic004G176600 Sobic001G082600--Sobic004G176600 Sobic009G179900 Sobic009G179900 Sobic001G082600--Sobic009G179900 Sobic003G079400--Sobic004G046200 Sobic003G079400--Sobic001G082600 Sobic006G197100 Sobic006G197100 Sobic003G079400--Sobic006G197100 Sobic002G003800 Sobic002G003800 Sobic003G079400--Sobic002G003800 Sobic004G042000 Sobic004G042000 Sobic003G079400--Sobic004G042000 Sobic003G079400--Sobic008G106700 Sobic003G016100 Sobic003G016100 Sobic003G079400--Sobic003G016100 Sobic004G349125 Sobic004G349125 Sobic003G079400--Sobic004G349125 Sobic009G187200 Sobic009G187200 Sobic003G079400--Sobic009G187200 Sobic004G046200--Sobic008G106700 Sobic004G046200--Sobic006G044100 Sobic004G046200--Sobic009G187200 Sobic006G199800 Sobic006G199800 Sobic004G046200--Sobic006G199800 Sobic003G084400 Sobic003G084400 Sobic004G046200--Sobic003G084400 Sobic004G046200--Sobic003G255200 Sobic001G500000 Sobic001G500000 Sobic004G046200--Sobic001G500000 Sobic004G046200--Sobic003G079400 Sobic009G111000 Sobic009G111000 Sobic004G046200--Sobic009G111000 Sobic006G044100--Sobic004G046200 Sobic006G044100--Sobic004G176600 Sobic006G044100--Sobic009G187200 Sobic001G481400 Sobic001G481400 Sobic006G044100--Sobic001G481400 Sobic006G044100--Sobic008G106700 Sobic003G366600 Sobic003G366600 Sobic006G044100--Sobic003G366600 Sobic008G172600 Sobic008G172600 Sobic006G044100--Sobic008G172600 Sobic006G277600 Sobic006G277600 Sobic006G044100--Sobic006G277600 Sobic006G044100--Sobic003G255200 Sobic004G348400 Sobic004G348400 Sobic003G011600--Sobic004G348400 Sobic003G368600 Sobic003G368600 Sobic003G011600--Sobic003G368600 Sobic003G011600--Sobic006G044100 Sobic003G011600--Sobic001G082600 Sobic003G011600--Sobic004G176600 Sobic003G011600--Sobic004G046200 Sobic003G011600--Sobic003G079400 Sobic003G011600--Sobic006G197100 Sobic003G255500 Sobic003G255500 Sobic003G011600--Sobic003G255500 Sobic004G107700 Sobic004G107700 Sobic003G255200--Sobic004G107700 Sobic002G125700 Sobic002G125700 Sobic003G255200--Sobic002G125700 Sobic003G255200--Sobic008G172600 Sobic003G255200--Sobic004G046200 Sobic010G259600 Sobic010G259600 Sobic003G255200--Sobic010G259600 Sobic001G449600 Sobic001G449600 Sobic003G255200--Sobic001G449600 Sobic007G087200 Sobic007G087200 Sobic003G255200--Sobic007G087200 Sobic001G503100 Sobic001G503100 Sobic003G255200--Sobic001G503100 Sobic002G034800 Sobic002G034800 Sobic003G255200--Sobic002G034800 Sobic007G215900--Sobic002G125700 Sobic003G352300 Sobic003G352300 Sobic007G215900--Sobic003G352300 Sobic007G215900--Sobic001G082600 Sobic002G287100 Sobic002G287100 Sobic007G215900--Sobic002G287100 Sobic006G092500 Sobic006G092500 Sobic007G215900--Sobic006G092500 Sobic002G375400 Sobic002G375400 Sobic007G215900--Sobic002G375400 Sobic001G147900 Sobic001G147900 Sobic007G215900--Sobic001G147900 Sobic007G215900--Sobic010G259600 Sobic007G215900--Sobic004G348400 Sobic008G106700--Sobic004G046200 Sobic008G106700--Sobic001G500000 Sobic008G106700--Sobic006G044100 Sobic008G106700--Sobic003G084400 Sobic008G106700--Sobic003G079400 Sobic009G183400 Sobic009G183400 Sobic008G106700--Sobic009G183400 Sobic008G106700--Sobic009G179900 Sobic001G139100 Sobic001G139100 Sobic008G106700--Sobic001G139100 Sobic008G106700--Sobic006G199800 Sobic004G176600--Sobic006G044100 Sobic004G176600--Sobic002G375400 Sobic004G176600--Sobic004G107700 Sobic005G084600 Sobic005G084600 Sobic004G176600--Sobic005G084600 Sobic004G176600--Sobic003G255200 Sobic003G437200 Sobic003G437200 Sobic004G176600--Sobic003G437200 Sobic003G417800 Sobic003G417800 Sobic004G176600--Sobic003G417800 Sobic010G185000 Sobic010G185000 Sobic004G176600--Sobic010G185000 Sobic004G176600--Sobic004G348400 Sobic009G179900--Sobic008G106700 Sobic003G062600 Sobic003G062600 Sobic009G179900--Sobic003G062600 Sobic009G179900--Sobic003G255200 Sobic009G179900--Sobic006G044100 Sobic009G179900--Sobic004G176600 Sobic009G179900--Sobic001G082600 Sobic009G179900--Sobic004G046200 Sobic009G179900--Sobic002G034800 Sobic009G179900--Sobic003G417800
Octagon: transcription factors


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