Gene annotation
Transcriptome id Sobic.006G004400.2
Synonym ATCOL4, Sb06g000570, COL4, CONSTANS-like 4
Functional annotation Similer to the candidate causal gene ZmCCT for Flowerin time QTL (PubMedID : 19822732)
CCT motif family protein, expressed
UniProt R9WUI9 , R9WWE2 , R9WTU9 , R9WUI4 , R9WSZ8 , R9WS24 , A0A1Z5RB97
Pfam PF06203
Panther DB PTHR31319 PTHR31319:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G24930 : CONSTANS-like 4
RAP-DB (Rice) LOC_Os07g15770.1 : CCT motif family protein, expressed
MaizeGDB (Corn) Zm00025a055477
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G007300 - -
2 Sobic.008G145200 aspartic proteinase nepenthesin precursor, putative, expressed -
3 Sobic.002G224300 no apical meristem protein, putative, expressed -
4 Sobic.001G261750 - -
5 Sobic.001G261750 - -
6 Sobic.001G261750 - -
7 Sobic.001G261750 - -
8 Sobic.001G261750 - -
9 Sobic.002G093600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Jacalin-like lectin domain containing protein, putative, expressed -
10 Sobic.008G028566 - -
11 Sobic.008G077800 GDSL-like lipase/acylhydrolase, putative, expressed -
12 Sobic.001G494600 expressed protein -
13 Sobic.002G391700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase, putative, expressed K00430: peroxidase
14 Sobic.008G028533 - -
15 Sobic.010G008466 - -
16 Sobic.005G086801 - -
17 Sobic.004G143801 - -
18 Sobic.009G069901 - -
19 Sobic.002G298400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dehydrodolichyl diphosphate synthase, putative, expressed K11778: DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase
20 Sobic.002G087500 - -


Gene co-expression network
sample Sobic006G004400 Sobic006G004400 Sobic006G007300 Sobic006G007300 Sobic006G004400--Sobic006G007300 Sobic008G145200 Sobic008G145200 Sobic006G004400--Sobic008G145200 Sobic002G224300 Sobic002G224300 Sobic006G004400--Sobic002G224300 Sobic001G261750 Sobic001G261750 Sobic006G004400--Sobic001G261750 Sobic002G093600 Sobic002G093600 Sobic006G004400--Sobic002G093600 Sobic008G077800 Sobic008G077800 Sobic006G007300--Sobic008G077800 Sobic008G028566 Sobic008G028566 Sobic006G007300--Sobic008G028566 Sobic006G007300--Sobic002G093600 Sobic002G391700 Sobic002G391700 Sobic006G007300--Sobic002G391700 Sobic006G007300--Sobic008G145200 Sobic008G028600 Sobic008G028600 Sobic006G007300--Sobic008G028600 Sobic005G219000 Sobic005G219000 Sobic006G007300--Sobic005G219000 Sobic002G087500 Sobic002G087500 Sobic006G007300--Sobic002G087500 Sobic002G298400 Sobic002G298400 Sobic006G007300--Sobic002G298400 Sobic008G145200--Sobic006G007300 Sobic008G145200--Sobic008G028566 Sobic008G145200--Sobic008G077800 Sobic008G145200--Sobic002G093600 Sobic008G145200--Sobic002G391700 Sobic008G145200--Sobic001G261750 Sobic008G028533 Sobic008G028533 Sobic002G224300--Sobic008G028533 Sobic002G224300--Sobic006G007300 Sobic002G224300--Sobic008G145200 Sobic002G224300--Sobic008G077800 Sobic002G224300--Sobic008G028566 Sobic002G224300--Sobic002G093600 Sobic002G224300--Sobic002G391700 Sobic002G224300--Sobic001G261750 Sobic001G261750--Sobic001G261750 Sobic001G494600 Sobic001G494600 Sobic001G261750--Sobic001G494600 Sobic001G261750--Sobic002G093600 Sobic001G261750--Sobic008G028533 Sobic001G261750--Sobic008G145200 Sobic001G261750--Sobic006G007300 Sobic002G093600--Sobic002G391700 Sobic002G093600--Sobic008G077800 Sobic002G093600--Sobic002G298400 Sobic002G093600--Sobic002G087500 Sobic002G093600--Sobic006G007300 Sobic002G093600--Sobic008G028566 Sobic002G040400 Sobic002G040400 Sobic002G093600--Sobic002G040400 Sobic002G093600--Sobic008G028600 Sobic004G143801 Sobic004G143801 Sobic002G093600--Sobic004G143801
Octagon: transcription factors


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