Gene annotation
Transcriptome id Sobic.008G102466.1
Synonym -
Functional annotation -
UniProt A0A1Z5R6G3
Pfam PF00421
Panther DB PTHR33180 PTHR33180:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016168; chlorophyll binding GO:0016020membrane GO:0009767photosynthetic electron transport chain GO:0009521photosystem


Orthologs (automatic annotation)
TAIR ATCG00680 : photosystem II reaction center protein B
RAP-DB (Rice) LOC_Os12g10600.1 : photosystem II P680 chlorophyll A apoprotein, putative, expressed
MaizeGDB (Corn) Zm00025a057835 , Zm00025a057579 , Zm00025a057666 , Zm00025a057608 , Zm00025a057693
Brachypodium KQK18187 , KQJ84939 , KQJ82569 , KQK12741
Barley HORVU0Hr1G029910.1 , AGP50780 , HORVU0Hr1G029910.2 , HORVU2Hr1G084020.1 , HORVU7Hr1G022430.1 , HORVU0Hr1G034250.1 , HORVU0Hr1G034250.2 , HORVU2Hr1G080040.1 , HORVU6Hr1G049390.7 , HORVU6Hr1G049390.6 , HORVU6Hr1G049390.3 , HORVU6Hr1G049390.2 , HORVU4Hr1G022140.1 , HORVU5Hr1G065050.5 , HORVU5Hr1G065050.4 , HORVU5Hr1G065050.1 , HORVU5Hr1G065050.3 , HORVU5Hr1G065050.2 , HORVU1Hr1G023940.1 , HORVU1Hr1G039760.2 , HORVU1Hr1G039760.3 , HORVU1Hr1G039760.1 , HORVU6Hr1G049390.1
Wheat TraesCS1D02G182600 , TraesCS3D02G053400 , TraesCS7B02G109800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G202050 - -
2 Sobic.002G202050 - -
3 Sobic.002G202050 - -
4 Sobic.002G202050 - -
5 Sobic.006G247200 AMP-binding enzyme, putative, expressed -
6 Sobic.002G382200 - -
7 Sobic.002G344800 - -
8 Sobic.010G143666 - -
9 Sobic.002G014100 OsFBX212 - F-box domain containing protein, expressed -
10 Sobic.004G178550 - -
11 Sobic.003G281000 - -
12 Sobic.005G133750 - -
13 Sobic.004G296750 - -
14 Sobic.003G111700 - -
15 Sobic.002G069300 DNA binding protein, putative, expressed -
16 Sobic.003G155700 transcription initiation factor IID, 18kD subunit family protein, expressed K03127: transcription initiation factor TFIID subunit 13
17 Sobic.003G175050 - -
18 Sobic.001G180700 - -
19 Sobic.010G194801 - -
20 Sobic.008G004500 MRH1, putative, expressed -


Gene co-expression network
sample Sobic008G102466 Sobic008G102466 Sobic002G202050 Sobic002G202050 Sobic008G102466--Sobic002G202050 Sobic006G247200 Sobic006G247200 Sobic008G102466--Sobic006G247200 Sobic002G382200 Sobic002G382200 Sobic008G102466--Sobic002G382200 Sobic002G344800 Sobic002G344800 Sobic008G102466--Sobic002G344800 Sobic010G143666 Sobic010G143666 Sobic008G102466--Sobic010G143666 Sobic002G014100 Sobic002G014100 Sobic008G102466--Sobic002G014100 Sobic002G202050--Sobic002G202050 Sobic002G202050--Sobic006G247200 Sobic002G202050--Sobic002G344800 Sobic002G202050--Sobic002G014100 Sobic002G202050--Sobic010G143666 Sobic002G202050--Sobic002G382200 Sobic005G133750 Sobic005G133750 Sobic002G202050--Sobic005G133750 Sobic006G247200--Sobic002G202050 Sobic006G247200--Sobic002G344800 Sobic006G247200--Sobic010G143666 Sobic006G247200--Sobic002G014100 Sobic006G247200--Sobic002G382200 Sobic006G247200--Sobic005G133750 Sobic002G382200--Sobic002G202050 Sobic002G382200--Sobic006G247200 Sobic002G382200--Sobic002G014100 Sobic002G382200--Sobic002G344800 Sobic002G382200--Sobic010G143666 Sobic002G382200--Sobic005G133750 Sobic002G344800--Sobic002G202050 Sobic002G344800--Sobic006G247200 Sobic002G344800--Sobic002G014100 Sobic002G344800--Sobic010G143666 Sobic002G344800--Sobic002G382200 Sobic004G178550 Sobic004G178550 Sobic002G344800--Sobic004G178550 Sobic010G143666--Sobic002G202050 Sobic010G143666--Sobic002G014100 Sobic010G143666--Sobic006G247200 Sobic002G069300 Sobic002G069300 Sobic010G143666--Sobic002G069300 Sobic003G281000 Sobic003G281000 Sobic010G143666--Sobic003G281000 Sobic010G143666--Sobic002G344800 Sobic002G014100--Sobic002G202050 Sobic002G014100--Sobic010G143666 Sobic002G014100--Sobic006G247200 Sobic002G014100--Sobic002G382200 Sobic002G014100--Sobic002G344800 Sobic002G014100--Sobic003G281000
Octagon: transcription factors


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