Gene annotation
Transcriptome id Sobic.008G126100.1
Synonym HTA6, Sb08g017770
Functional annotation Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
UniProt C5YPM8
Pfam PF00125 PF16211
Panther DB PTHR23430
NCBI CDD -
KEGG Orthology K11251; histone H2A
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT5G02560 : histone H2A 12
RAP-DB (Rice) LOC_Os05g38640.1 : Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a045260 , Zm00025a047800 , Zm00025a014436 , Zm00025a007941 , Zm00025a048317 , Zm00025a016321 , Zm00025a040905
Brachypodium KQK11794 , KQK07730 , KQK05873 , KQK13476 , KQK22303 , KQJ89933
Barley HORVU3Hr1G068320.2 , HORVU3Hr1G014560.1 , HORVU1Hr1G071950.1 , HORVU3Hr1G068320.3 , HORVU5Hr1G109460.1 , HORVU3Hr1G116550.2 , HORVU3Hr1G116550.1 , HORVU5Hr1G109460.2 , HORVU4Hr1G029280.1 , HORVU3Hr1G116550.5 , HORVU3Hr1G116550.4 , HORVU0Hr1G016940.1 , HORVU0Hr1G016940.2 , HORVU0Hr1G016940.3 , HORVU6Hr1G006120.1 , HORVU4Hr1G058940.8 , HORVU6Hr1G006120.2 , HORVU4Hr1G058940.2 , HORVU4Hr1G058940.3 , HORVU6Hr1G092390.1 , HORVU4Hr1G058940.1 , HORVU4Hr1G058940.6 , HORVU4Hr1G058940.7 , HORVU4Hr1G058940.4 , HORVU4Hr1G058940.5 , HORVU4Hr1G070250.1 , HORVU4Hr1G070250.2 , HORVU4Hr1G070250.3 , HORVU4Hr1G070250.4 , HORVU4Hr1G070250.5 , HORVU7Hr1G100100.3 , HORVU7Hr1G100100.2 , HORVU7Hr1G100100.1 , HORVU7Hr1G117230.2 , HORVU0Hr1G013190.1 , HORVU0Hr1G013190.2 , HORVU6Hr1G029220.1 , HORVU7Hr1G112470.1 , HORVU6Hr1G029220.3 , HORVU6Hr1G029220.2 , HORVU7Hr1G117230.1 , HORVU6Hr1G003750.1 , HORVU7Hr1G117230.3 , HORVU4Hr1G090910.2 , HORVU5Hr1G069680.1 , HORVU1Hr1G005870.1 , HORVU1Hr1G005870.3 , HORVU1Hr1G005870.2 , HORVU6Hr1G011620.2 , HORVU6Hr1G011620.3 , HORVU6Hr1G011620.1 , HORVU6Hr1G011620.4 , HORVU6Hr1G005960.1 , HORVU6Hr1G005960.2 , HORVU6Hr1G005960.3 , HORVU6Hr1G005960.4 , HORVU6Hr1G005960.5 , HORVU6Hr1G005960.6 , HORVU6Hr1G005960.7 , HORVU6Hr1G005960.8 , HORVU6Hr1G005960.9 , HORVU3Hr1G116550.3 , HORVU6Hr1G006090.1 , HORVU2Hr1G043860.2 , HORVU2Hr1G043860.1 , HORVU5Hr1G090670.1 , HORVU5Hr1G090670.2 , HORVU6Hr1G006080.2 , HORVU6Hr1G006080.1 , HORVU6Hr1G092280.1 , HORVU4Hr1G058810.1 , HORVU2Hr1G110470.3 , HORVU2Hr1G110470.2 , HORVU2Hr1G110470.1 , HORVU6Hr1G092280.2 , HORVU5Hr1G069690.2 , HORVU5Hr1G069690.1 , HORVU5Hr1G108640.1 , HORVU1Hr1G071960.2 , HORVU1Hr1G071960.3 , HORVU1Hr1G071960.4 , HORVU6Hr1G011490.4 , HORVU6Hr1G011490.1 , HORVU1Hr1G071960.1 , HORVU6Hr1G011490.3 , HORVU6Hr1G011490.2 , HORVU4Hr1G008800.2 , HORVU4Hr1G008800.1 , HORVU7Hr1G100400.2 , HORVU7Hr1G100400.1 , HORVU5Hr1G082190.1 , HORVU6Hr1G006140.2 , HORVU6Hr1G006140.1 , HORVU7Hr1G100120.3 , HORVU7Hr1G100120.2 , HORVU7Hr1G100120.5 , HORVU7Hr1G100120.7 , HORVU7Hr1G100120.6 , HORVU7Hr1G100120.9 , HORVU7Hr1G100120.8 , HORVU7Hr1G100120.14 , HORVU7Hr1G100120.11 , HORVU7Hr1G100120.10 , HORVU7Hr1G100120.13 , HORVU7Hr1G100120.12 , HORVU3Hr1G068240.1 , HORVU6Hr1G005960.10 , HORVU6Hr1G006130.6 , HORVU6Hr1G006130.7 , HORVU6Hr1G006130.5 , HORVU6Hr1G009020.1 , HORVU6Hr1G005940.6 , HORVU6Hr1G005940.4 , HORVU6Hr1G005940.5 , HORVU6Hr1G005940.2 , HORVU6Hr1G005940.3 , HORVU6Hr1G005940.1
Wheat TraesCS6B02G049200 , TraesCS6B02G049000 , TraesCS1B02G049100 , TraesCS6B02G048700 , TraesCS1A02G038200 , TraesCS1A02G286900 , TraesCS3D02G521700 , TraesCS6A02G061700 , TraesCS6D02G062300 , TraesCS6D02G062800 , TraesCS3A02G534300 , TraesCS1B02G296300 , TraesCS6A02G034600 , TraesCS1B02G357400 , TraesCS6A02G062600 , TraesCS3D02G539300 , TraesCS7D02G520000 , TraesCS7B02G449800 , TraesCS6A02G075400 , TraesCS4D02G053100 , TraesCS6A02G034300 , TraesCS1A02G038100 , TraesCS6A02G034900 , TraesCS6B02G082300 , TraesCS1D02G285800 , TraesCS6B02G082500 , TraesCS6B02G049500 , TraesCS6D02G040800 , TraesCS5B02G473100 , TraesCS6A02G034800 , TraesCS3A02G534100 , TraesCS6D02G040700 , TraesCS6B02G048300 , TraesCS1D02G039900 , TraesCS5D02G474800 , TraesCS6D02G039900 , TraesCS3A02G102400 , TraesCS6B02G058400 , TraesCS1B02G048900 , TraesCS6A02G035100 , TraesCS6B02G082400 , TraesCS6D02G040400 , TraesCS6A02G035200 , TraesCS6D02G040300 , TraesCS6B02G048600 , TraesCS6D02G040500 , TraesCS4B02G052900 , TraesCS6B02G082100 , TraesCS7B02G408300 , TraesCS1D02G039800 , TraesCS3B02G610800 , TraesCS3D02G539700 , TraesCS7B02G408400 , TraesCS6B02G100100 , TraesCS6B02G049400 , TraesCS5A02G462100 , TraesCS6A02G042700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G030100 protein kinase domain containing protein, expressed -
2 Sobic.003G293550 - -
3 Sobic.010G079150 - -
4 Sobic.001G146450 - -
5 Sobic.010G158300 zinc finger, C3HC4 type domain containing protein, expressed -
6 Sobic.001G018700 RD26, putative, expressed -
7 Sobic.001G018700 RD26, putative, expressed -
8 Sobic.001G018700 RD26, putative, expressed -
9 Sobic.001G018700 RD26, putative, expressed -
10 Sobic.001G018700 RD26, putative, expressed -
11 Sobic.001G018700 RD26, putative, expressed -
12 Sobic.001G018700 RD26, putative, expressed -
13 Sobic.001G018700 RD26, putative, expressed -
14 Sobic.001G018700 RD26, putative, expressed -
15 Sobic.001G018700 RD26, putative, expressed -
16 Sobic.001G018700 RD26, putative, expressed -
17 Sobic.001G018700 RD26, putative, expressed -
18 Sobic.001G018700 RD26, putative, expressed -
19 Sobic.001G018700 RD26, putative, expressed -
20 Sobic.001G018700 RD26, putative, expressed -


Gene co-expression network
sample Sobic008G126100 Sobic008G126100 Sobic002G030100 Sobic002G030100 Sobic008G126100--Sobic002G030100 Sobic003G293550 Sobic003G293550 Sobic008G126100--Sobic003G293550 Sobic010G079150 Sobic010G079150 Sobic008G126100--Sobic010G079150 Sobic001G146450 Sobic001G146450 Sobic008G126100--Sobic001G146450 Sobic010G158300 Sobic010G158300 Sobic008G126100--Sobic010G158300 Sobic001G018700 Sobic001G018700 Sobic008G126100--Sobic001G018700 Sobic002G030100--Sobic008G126100 Sobic002G030100--Sobic003G293550 Sobic002G030100--Sobic010G079150 Sobic002G030100--Sobic001G018700 Sobic003G293550--Sobic002G030100 Sobic003G293550--Sobic008G126100 Sobic008G170900 Sobic008G170900 Sobic003G293550--Sobic008G170900 Sobic010G216500 Sobic010G216500 Sobic003G293550--Sobic010G216500 Sobic003G405400 Sobic003G405400 Sobic003G293550--Sobic003G405400 Sobic001G539100 Sobic001G539100 Sobic003G293550--Sobic001G539100 Sobic009G019301 Sobic009G019301 Sobic003G293550--Sobic009G019301 Sobic002G218350 Sobic002G218350 Sobic003G293550--Sobic002G218350 Sobic001G210500 Sobic001G210500 Sobic003G293550--Sobic001G210500 Sobic001G250150 Sobic001G250150 Sobic010G079150--Sobic001G250150 Sobic010G079150--Sobic002G030100 Sobic010G079150--Sobic008G126100 Sobic010G079150--Sobic003G293550 Sobic010G137500 Sobic010G137500 Sobic010G079150--Sobic010G137500 Sobic010G079150--Sobic010G216500 Sobic005G217400 Sobic005G217400 Sobic010G079150--Sobic005G217400 Sobic004G007550 Sobic004G007550 Sobic010G079150--Sobic004G007550 Sobic004G300400 Sobic004G300400 Sobic010G079150--Sobic004G300400 Sobic006G176300 Sobic006G176300 Sobic001G146450--Sobic006G176300 Sobic001G146450--Sobic001G018700 Sobic010G158300--Sobic002G218350 Sobic007G078400 Sobic007G078400 Sobic010G158300--Sobic007G078400 Sobic006G089200 Sobic006G089200 Sobic010G158300--Sobic006G089200 Sobic010G158300--Sobic001G018700 Sobic001G018700--Sobic001G018700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.