Gene annotation
Transcriptome id Sobic.001G255300.1
Synonym Sb01g022730
Functional annotation Protein tyrosine decarboxylase 4 (OS) (PubMedID : 27208977)
decarboxylase, putative, expressed
UniProt C5WMA6
Pfam PF00282
Panther DB PTHR11999 PTHR11999:SF88
NCBI CDD -
KEGG Orthology K01592; tyrosine decarboxylase
Gene Ontology GO:0016831; carboxy-lyase activity


Orthologs (automatic annotation)
TAIR AT2G20340 : Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
RAP-DB (Rice) LOC_Os10g26110.1 : decarboxylase, putative, expressed
MaizeGDB (Corn) Zm00025a007026
Brachypodium -
Barley HORVU3Hr1G088940.1 , HORVU3Hr1G088880.1 , HORVU3Hr1G088880.2
Wheat TraesCS3A02G393800
Populus -


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cDNA sequences
Sobic.001G255300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G379300 peroxidase precursor, putative, expressed K00430: peroxidase
2 Sobic.004G328900 expressed protein -
3 Sobic.006G238100 LTPL126 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
4 Sobic.003G317800 lysM domain containing protein, putative -
5 Sobic.008G163200 OsSCP9 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
6 Sobic.002G416950 - -
7 Sobic.003G007800 phosphorylase domain containing protein, putative, expressed -
8 Sobic.008G189500 similar to Secretory acid phosphatase - Pfam Calcineurin-like phosphoesterase(PubMedID : 24655390)@similar to Secretory acid phosphatase - Pfam Calcineurin -like phosphoesterase(PubMedID : 24655390)@Ser/Thr protein phosphatase family protein, putative, expressed -
9 Sobic.003G068300 transferase family protein, putative, expressed -
10 Sobic.004G060700 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
11 Sobic.005G029400 strictosidine synthase, putative, expressed -
12 Sobic.002G128600 lecithin:cholesterol acyltransferase, putative, expressed K06129: lysophospholipase III
13 Sobic.004G038300 cycloartenol synthase, putative, expressed -
14 Sobic.007G069500 expressed protein -
15 Sobic.007G170800 Fatty acyl CoA reductase 1 FAR1 (At)(PubMedID : 27208977)@male sterility protein 2, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
16 Sobic.002G415300 - -
17 Sobic.009G070600 HAD superfamily phosphatase, putative, expressed -
18 Sobic.009G206000 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
19 Sobic.002G415400 - -
20 Sobic.007G009600 expressed protein -


Gene co-expression network
sample Sobic001G255300 Sobic001G255300 Sobic001G379300 Sobic001G379300 Sobic001G255300--Sobic001G379300 Sobic004G328900 Sobic004G328900 Sobic001G255300--Sobic004G328900 Sobic006G238100 Sobic006G238100 Sobic001G255300--Sobic006G238100 Sobic003G317800 Sobic003G317800 Sobic001G255300--Sobic003G317800 Sobic008G163200 Sobic008G163200 Sobic001G255300--Sobic008G163200 Sobic002G416950 Sobic002G416950 Sobic001G255300--Sobic002G416950 Sobic003G007800 Sobic003G007800 Sobic001G255300--Sobic003G007800 Sobic008G189500 Sobic008G189500 Sobic001G255300--Sobic008G189500 Sobic003G068300 Sobic003G068300 Sobic001G255300--Sobic003G068300 Sobic001G379300--Sobic006G238100 Sobic001G379300--Sobic002G416950 Sobic001G379300--Sobic001G255300 Sobic001G379300--Sobic004G328900 Sobic001G379300--Sobic003G317800 Sobic004G060700 Sobic004G060700 Sobic001G379300--Sobic004G060700 Sobic007G009600 Sobic007G009600 Sobic001G379300--Sobic007G009600 Sobic001G379300--Sobic008G163200 Sobic007G069500 Sobic007G069500 Sobic001G379300--Sobic007G069500 Sobic004G328900--Sobic003G317800 Sobic004G328900--Sobic001G255300 Sobic004G328900--Sobic001G379300 Sobic004G328900--Sobic008G163200 Sobic004G328900--Sobic002G416950 Sobic002G128600 Sobic002G128600 Sobic004G328900--Sobic002G128600 Sobic004G328900--Sobic006G238100 Sobic004G328900--Sobic003G007800 Sobic004G328900--Sobic003G068300 Sobic006G238100--Sobic001G379300 Sobic006G238100--Sobic002G416950 Sobic006G238100--Sobic004G060700 Sobic006G238100--Sobic001G255300 Sobic005G200600 Sobic005G200600 Sobic006G238100--Sobic005G200600 Sobic006G238100--Sobic007G009600 Sobic002G415300 Sobic002G415300 Sobic006G238100--Sobic002G415300 Sobic006G238100--Sobic008G163200 Sobic002G415400 Sobic002G415400 Sobic006G238100--Sobic002G415400 Sobic003G317800--Sobic004G328900 Sobic003G317800--Sobic002G128600 Sobic003G317800--Sobic001G379300 Sobic003G317800--Sobic001G255300 Sobic003G317800--Sobic008G163200 Sobic004G038300 Sobic004G038300 Sobic003G317800--Sobic004G038300 Sobic003G317800--Sobic002G416950 Sobic003G317800--Sobic003G007800 Sobic003G317800--Sobic007G069500 Sobic008G163200--Sobic002G415300 Sobic008G163200--Sobic004G060700 Sobic008G163200--Sobic002G415400 Sobic008G163200--Sobic002G416950 Sobic007G170800 Sobic007G170800 Sobic008G163200--Sobic007G170800 Sobic008G163200--Sobic003G068300 Sobic008G163200--Sobic001G379300 Sobic008G163200--Sobic001G255300 Sobic001G435600 Sobic001G435600 Sobic008G163200--Sobic001G435600 Sobic002G416950--Sobic004G060700 Sobic002G416950--Sobic001G379300 Sobic002G416950--Sobic002G415300 Sobic002G416950--Sobic006G238100 Sobic002G416950--Sobic007G009600 Sobic002G416950--Sobic001G435600 Sobic002G416950--Sobic008G163200 Sobic002G416950--Sobic007G170800 Sobic002G416950--Sobic002G415400 Sobic003G007800--Sobic008G189500 Sobic003G007800--Sobic001G255300 Sobic005G190800 Sobic005G190800 Sobic003G007800--Sobic005G190800 Sobic006G175700 Sobic006G175700 Sobic003G007800--Sobic006G175700 Sobic003G007800--Sobic004G328900 Sobic003G007800--Sobic003G317800 Sobic003G007800--Sobic002G128600 Sobic005G029400 Sobic005G029400 Sobic003G007800--Sobic005G029400 Sobic003G007800--Sobic004G038300 Sobic008G189500--Sobic003G007800 Sobic001G472000 Sobic001G472000 Sobic008G189500--Sobic001G472000 Sobic008G189500--Sobic001G255300 Sobic008G189500--Sobic005G029400 Sobic009G070600 Sobic009G070600 Sobic008G189500--Sobic009G070600 Sobic008G189500--Sobic004G328900 Sobic008G189500--Sobic003G317800 Sobic008G189500--Sobic001G379300 Sobic008G189500--Sobic002G128600 Sobic003G068300--Sobic002G415300 Sobic003G068300--Sobic002G415400 Sobic003G068300--Sobic008G163200 Sobic003G068300--Sobic001G255300 Sobic009G206000 Sobic009G206000 Sobic003G068300--Sobic009G206000 Sobic003G068300--Sobic004G060700 Sobic003G068300--Sobic006G238100 Sobic003G068300--Sobic002G416950 Sobic003G068300--Sobic004G328900
Octagon: transcription factors


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