Gene annotation
| Transcriptome id | Sobic.001G327500.2 |
|---|---|
| Synonym | Sb01g031695 |
| Functional annotation | uridine 5-monophosphate synthase, putative, expressed |
| UniProt | A0A1Z5S912 |
| Pfam | PF00215 |
| Panther DB | PTHR19278 PTHR19278:SF39 |
| NCBI CDD | - |
| KEGG Orthology | K13421; uridine monophosphate synthetase |
| Gene Ontology | GO:0006207; 'de novo' pyrimidine nucleobase biosynthetic process GO:0004590orotidine-5'-phosphate decarboxylase activity |
Orthologs (automatic annotation)
| TAIR | AT3G54470 : uridine 5\'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) |
|---|---|
| RAP-DB (Rice) | LOC_Os01g72240.1 : uridine 5-monophosphate synthase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a025985 , Zm00025a039123 |
| Brachypodium | KQK11572 , KQK11573 |
| Barley | HORVU3Hr1G108360.12 , HORVU3Hr1G108360.10 , HORVU3Hr1G108390.2 , HORVU3Hr1G108390.1 , HORVU3Hr1G108360.3 , HORVU3Hr1G108360.2 , HORVU3Hr1G108360.1 , HORVU3Hr1G108360.6 , HORVU3Hr1G108360.5 , HORVU3Hr1G108360.4 , HORVU3Hr1G108360.9 |
| Wheat | TraesCS3D02G492900 , TraesCS3B02G547300 , TraesCS3D02G493700 , TraesCS3D02G494000 , TraesCS3B02G547900 , TraesCS3B02G547900 , TraesCS3B02G547500 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G165800 | zinc finger family protein, putative, expressed | - |
| 2 | Sobic.007G159100 | expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@tetraspanin family protein, putative, expressed | - |
| 3 | Sobic.001G381400 | expressed protein | - |
| 4 | Sobic.002G102132 | - | - |
| 5 | Sobic.002G090100 | - | - |
| 6 | Sobic.002G090100 | - | - |
| 7 | Sobic.002G090100 | - | - |
| 8 | Sobic.002G090100 | - | - |
| 9 | Sobic.002G090100 | - | - |
| 10 | Sobic.002G090100 | - | - |
| 11 | Sobic.001G065900 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 12 | Sobic.004G263100 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 13 | Sobic.008G079500 | glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 14 | Sobic.006G057500 | flavonol sulfotransferase, putative, expressed | - |
| 15 | Sobic.002G100832 | - | - |
| 16 | Sobic.004G094900 | expressed protein | - |
| 17 | Sobic.002G390000 | dirigent, putative, expressed | - |
| 18 | Sobic.002G238600 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@- | - |
| 19 | Sobic.007G100032 | - | - |
| 20 | Sobic.002G388800 | cytochrome P450 72A1, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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