Gene annotation
Transcriptome id Sobic.002G021600.1
Synonym Sb02g002000
Functional annotation OsFBX234 - F-box domain containing protein, expressed
UniProt A0A1B6Q8S9
Pfam PF00646
Panther DB PTHR32133 PTHR32133:SF148
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G18330 : F-box family protein
RAP-DB (Rice) LOC_Os07g23900.1 : OsFBX234 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium PNT70092
Barley HORVU6Hr1G014370.11 , HORVU6Hr1G014370.10 , HORVU5Hr1G122000.2 , HORVU5Hr1G122000.5 , HORVU5Hr1G122000.6 , HORVU5Hr1G122000.7 , HORVU2Hr1G087440.1 , HORVU4Hr1G043620.3 , HORVU4Hr1G043620.2 , HORVU4Hr1G043620.1 , HORVU4Hr1G043620.4 , HORVU4Hr1G022880.2 , HORVU4Hr1G022880.1 , HORVU6Hr1G014370.6 , HORVU6Hr1G014370.5 , HORVU2Hr1G024620.1 , HORVU6Hr1G014370.9 , HORVU6Hr1G014370.8 , HORVU6Hr1G014370.7 , HORVU6Hr1G014370.4 , HORVU6Hr1G014370.3 , HORVU6Hr1G014370.2 , HORVU6Hr1G014370.1
Wheat TraesCS6A02G063500 , TraesCS6A02G083600 , TraesCS6D02G294100 , TraesCS4A02G215800 , TraesCS6D02G077200 , TraesCS5A02G487500 , TraesCS6A02G083600 , TraesCS4D02G097000 , TraesCS4D02G097000 , TraesCS4B02G100500 , TraesCSU02G142000 , TraesCS6D02G061200 , TraesCS6A02G083500 , TraesCS2B02G512800 , TraesCS4A02G215700 , TraesCS2B02G378200 , TraesCS2B02G378200 , TraesCS1B02G271200 , TraesCS2D02G486000 , TraesCS6A02G314800 , TraesCS6B02G113400 , TraesCS5B02G525700 , TraesCS4B02G100400 , TraesCS6B02G085100 , TraesCS4A02G332700 , TraesCS4D02G097100 , TraesCS1D02G260600
Populus -


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cDNA sequences
Sobic.002G021600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G207500 OsFBX238 - F-box domain containing protein, expressed -
2 Sobic.002G101200 zinc finger, C3HC4 type domain containing protein, expressed K10638: UHRF1, E3 ubiquitin-protein ligase UHRF1
3 Sobic.002G015800 OsFBD13 - F-box and FBD domain containing protein, expressed -
4 Sobic.002G100000 OsFBL33 - F-box domain and LRR containing protein, expressed -
5 Sobic.010G209300 expressed protein -
6 Sobic.003G092600 seven in absentia protein family protein, expressed -
7 Sobic.003G307600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
8 Sobic.002G408700 OsFBX259 - F-box domain containing protein, expressed -
9 Sobic.005G001500 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@"PBF1(Ortholog in maize:Lang et al., 2014)"(PubMedID : 31659895)@Upregulated in response to drought and salt stress(PubMedID : 27230576)@dof zinc finger domain containing protein, putative, expressed -
10 Sobic.009G021300 Jacalin-like lectin domain containing protein, putative, expressed -
11 Sobic.007G122932 - -
12 Sobic.009G051201 - -
13 Sobic.004G212350 - -
14 Sobic.002G166800 RNA recognition motif containing protein, putative, expressed -
15 Sobic.006G031000 MYB family transcription factor, putative, expressed -
16 Sobic.005G089101 - K08066: NFYC, nuclear transcription factor Y, gamma
17 Sobic.005G075000 LTPL33 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
18 Sobic.001G142600 OsFBX103 - F-box domain containing protein, expressed -
19 Sobic.007G123000 sex determination protein tasselseed-2, putative, expressed -
20 Sobic.010G022600 encodes granule-bound ADP-glucose-gluosyl transferase(PubMedID : 20585750)@-(PubMedID : 9866201)@starch synthase, putative, expressed K13679: granule-bound starch synthase


Gene co-expression network
sample Sobic002G021600 Sobic002G021600 Sobic009G207500 Sobic009G207500 Sobic002G021600--Sobic009G207500 Sobic002G101200 Sobic002G101200 Sobic002G021600--Sobic002G101200 Sobic002G015800 Sobic002G015800 Sobic002G021600--Sobic002G015800 Sobic002G100000 Sobic002G100000 Sobic002G021600--Sobic002G100000 Sobic010G209300 Sobic010G209300 Sobic002G021600--Sobic010G209300 Sobic003G092600 Sobic003G092600 Sobic002G021600--Sobic003G092600 Sobic003G307600 Sobic003G307600 Sobic002G021600--Sobic003G307600 Sobic002G408700 Sobic002G408700 Sobic002G021600--Sobic002G408700 Sobic005G001500 Sobic005G001500 Sobic002G021600--Sobic005G001500 Sobic005G090500 Sobic005G090500 Sobic009G207500--Sobic005G090500 Sobic006G271400 Sobic006G271400 Sobic009G207500--Sobic006G271400 Sobic002G053100 Sobic002G053100 Sobic009G207500--Sobic002G053100 Sobic009G207500--Sobic010G209300 Sobic006G031000 Sobic006G031000 Sobic009G207500--Sobic006G031000 Sobic009G021300 Sobic009G021300 Sobic009G207500--Sobic009G021300 Sobic005G075000 Sobic005G075000 Sobic009G207500--Sobic005G075000 Sobic001G142600 Sobic001G142600 Sobic009G207500--Sobic001G142600 Sobic009G207500--Sobic002G408700 Sobic002G217000 Sobic002G217000 Sobic002G101200--Sobic002G217000 Sobic005G032500 Sobic005G032500 Sobic002G101200--Sobic005G032500 Sobic002G058900 Sobic002G058900 Sobic002G101200--Sobic002G058900 Sobic007G037200 Sobic007G037200 Sobic002G101200--Sobic007G037200 Sobic002G166800 Sobic002G166800 Sobic002G101200--Sobic002G166800 Sobic002G101200--Sobic002G100000 Sobic003G225800 Sobic003G225800 Sobic002G101200--Sobic003G225800 Sobic002G101200--Sobic006G031000 Sobic009G051201 Sobic009G051201 Sobic002G101200--Sobic009G051201 Sobic002G015800--Sobic003G092600 Sobic001G261529 Sobic001G261529 Sobic002G015800--Sobic001G261529 Sobic005G083280 Sobic005G083280 Sobic002G015800--Sobic005G083280 Sobic004G262100 Sobic004G262100 Sobic002G015800--Sobic004G262100 Sobic001G509100 Sobic001G509100 Sobic002G015800--Sobic001G509100 Sobic001G324800 Sobic001G324800 Sobic002G015800--Sobic001G324800 Sobic010G022600 Sobic010G022600 Sobic002G015800--Sobic010G022600 Sobic010G107300 Sobic010G107300 Sobic002G015800--Sobic010G107300 Sobic004G322901 Sobic004G322901 Sobic002G015800--Sobic004G322901 Sobic005G089101 Sobic005G089101 Sobic002G100000--Sobic005G089101 Sobic004G212350 Sobic004G212350 Sobic002G100000--Sobic004G212350 Sobic002G100000--Sobic007G037200 Sobic010G181900 Sobic010G181900 Sobic002G100000--Sobic010G181900 Sobic002G100000--Sobic005G032500 Sobic002G100000--Sobic002G217000 Sobic008G168400 Sobic008G168400 Sobic002G100000--Sobic008G168400 Sobic004G220900 Sobic004G220900 Sobic002G100000--Sobic004G220900 Sobic007G187100 Sobic007G187100 Sobic002G100000--Sobic007G187100 Sobic010G209300--Sobic002G408700 Sobic007G122932 Sobic007G122932 Sobic010G209300--Sobic007G122932 Sobic010G209300--Sobic009G021300 Sobic003G291100 Sobic003G291100 Sobic010G209300--Sobic003G291100 Sobic010G209300--Sobic005G001500 Sobic010G209300--Sobic006G271400 Sobic010G209300--Sobic001G142600 Sobic007G147300 Sobic007G147300 Sobic010G209300--Sobic007G147300 Sobic010G058000 Sobic010G058000 Sobic010G209300--Sobic010G058000 Sobic003G092600--Sobic002G015800 Sobic003G092600--Sobic005G083280 Sobic003G092600--Sobic001G261529 Sobic003G092600--Sobic004G322901 Sobic009G014900 Sobic009G014900 Sobic003G092600--Sobic009G014900 Sobic006G015800 Sobic006G015800 Sobic003G092600--Sobic006G015800 Sobic003G092600--Sobic004G262100 Sobic003G092600--Sobic001G324800 Sobic003G092600--Sobic001G509100 Sobic003G307600--Sobic010G181900 Sobic003G307600--Sobic005G001500 Sobic003G307600--Sobic005G089101 Sobic003G307600--Sobic002G100000 Sobic003G227800 Sobic003G227800 Sobic003G307600--Sobic003G227800 Sobic003G063900 Sobic003G063900 Sobic003G307600--Sobic003G063900 Sobic003G307600--Sobic002G408700 Sobic003G307600--Sobic008G168400 Sobic003G307600--Sobic009G021300 Sobic002G408700--Sobic005G001500 Sobic002G408700--Sobic010G209300 Sobic002G408700--Sobic009G021300 Sobic002G408700--Sobic001G142600 Sobic002G408700--Sobic007G122932 Sobic002G408700--Sobic010G181900 Sobic010G102900 Sobic010G102900 Sobic002G408700--Sobic010G102900 Sobic002G408700--Sobic003G291100 Sobic002G408700--Sobic003G227800 Sobic005G001500--Sobic009G021300 Sobic005G001500--Sobic002G408700 Sobic005G001500--Sobic003G227800 Sobic005G001500--Sobic010G102900 Sobic005G001500--Sobic001G142600 Sobic005G001500--Sobic003G307600 Sobic008G071900 Sobic008G071900 Sobic005G001500--Sobic008G071900 Sobic005G001500--Sobic003G063900 Sobic005G001500--Sobic007G122932
Octagon: transcription factors


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