Gene annotation
| Transcriptome id |
Sobic.002G319900.1 |
|---|
| Synonym |
Sb02g034850, BCS1 |
|---|
| Functional annotation |
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
AAA family ATPase, putative, expressed
|
|---|
| UniProt |
C5XA26 |
|---|
| Pfam |
PF00004
PF14363 |
|---|
| Panther DB |
PTHR23070
PTHR23070:SF37 |
|---|
| NCBI CDD |
KOG0743; AAA+-type ATPase |
|---|
| KEGG Orthology |
K08900; mitochondrial chaperone BCS1 |
|---|
| Gene Ontology |
GO:0005524; ATP binding |
|---|
Orthologs (automatic annotation)
| TAIR |
AT3G50930 : cytochrome BC1 synthesis |
|---|
| RAP-DB (Rice) |
LOC_Os03g38800.1 : AAA family ATPase, putative, expressed |
|---|
| MaizeGDB (Corn) |
Zm00025a016039
, Zm00025a044783
, Zm00025a008606 |
|---|
| Brachypodium |
PNT76854
, PNT76855
, KQK15981
, KQK20482
, KQK20481
, KQK15975
, KQK08934
, KQK20476
, PNT75004
, PNT75003
, PNT76856
, PNT76857
, KQJ98547
, KQK20475 |
|---|
| Barley |
HORVU5Hr1G000640.8
, HORVU5Hr1G000640.1
, HORVU5Hr1G000640.3
, HORVU5Hr1G000640.5
, HORVU5Hr1G000640.4
, HORVU5Hr1G000640.7
, HORVU2Hr1G046240.1
, HORVU2Hr1G046240.3
, HORVU5Hr1G026270.4
, HORVU5Hr1G026270.5
, HORVU5Hr1G026270.6
, HORVU5Hr1G026270.1
, HORVU5Hr1G026270.2
, HORVU5Hr1G026270.3
, HORVU2Hr1G046310.2
, HORVU2Hr1G046330.4
, HORVU2Hr1G046330.1
, HORVU2Hr1G046330.2
, HORVU2Hr1G046330.3
, HORVU5Hr1G124260.2
, HORVU5Hr1G124260.1
, HORVU3Hr1G114150.2
, HORVU2Hr1G046310.3
, HORVU2Hr1G046310.1
, HORVU5Hr1G124290.8
, HORVU5Hr1G124290.7
, HORVU5Hr1G124290.6
, HORVU5Hr1G124290.5
, HORVU5Hr1G124290.4
, HORVU5Hr1G124290.3
, HORVU5Hr1G124290.2
, HORVU5Hr1G124290.1
, HORVU3Hr1G117690.1
, HORVU6Hr1G021770.3
, HORVU6Hr1G021770.2
, HORVU6Hr1G021770.1
, HORVU6Hr1G021770.4
, HORVU5Hr1G107410.2
, HORVU5Hr1G107410.3
, HORVU5Hr1G107410.4
, HORVU1Hr1G093600.5
, HORVU1Hr1G093600.4
, HORVU1Hr1G093600.1
, HORVU1Hr1G093600.3
, HORVU1Hr1G093600.2
, HORVU2Hr1G046180.3
, HORVU2Hr1G046180.2
, HORVU2Hr1G046180.1
, HORVU2Hr1G046180.5
, HORVU2Hr1G046180.4 |
|---|
| Wheat |
TraesCS1D02G439400
, TraesCS2B02G247000
, TraesCS3A02G357100
, TraesCS2A02G221700
, TraesCS1D02G439500
, TraesCS1B02G465000
, TraesCS1A02G430200
, TraesCS3B02G389700
, TraesCS1A02G429300
, TraesCS2D02G227400
, TraesCS2A02G221500
, TraesCS1D02G438800
, TraesCS1B02G464100
, TraesCS1A02G430100 |
|---|
| Populus |
- |
|---|
JBrowse
Expression pattern by RNA-Seq analysis
| FPKM plot |
 |
Find similar expressed genes
| Top 20 genes with similar expressed profiles |
 |
| Rank |
Gene |
Function |
KEGG orthology |
|---|
| 1 |
Sobic.003G267150 |
- |
- |
| 2 |
Sobic.002G160500 |
- |
K07466: RFA1, RPA1, replication factor A1 |
| 3 |
Sobic.002G160500 |
- |
K07466: RFA1, RPA1, replication factor A1 |
| 4 |
Sobic.002G160500 |
- |
K07466: RFA1, RPA1, replication factor A1 |
| 5 |
Sobic.002G160500 |
- |
K07466: RFA1, RPA1, replication factor A1 |
| 6 |
Sobic.002G160500 |
- |
K07466: RFA1, RPA1, replication factor A1 |
| 7 |
Sobic.004G262550 |
- |
- |
| 8 |
Sobic.004G313000 |
leucine rich repeat containing protein, expressed |
- |
| 9 |
Sobic.009G091940 |
- |
- |
| 10 |
Sobic.003G389150 |
- |
- |
| 11 |
Sobic.009G115800 |
REX1 DNA Repair family protein, expressed |
K10845: TTDA, GTF2H5, TFIIH basal transcription factor complex TTD-A subunit |
| 12 |
Sobic.006G159500 |
serpin domain containing protein, putative, expressed |
K13963: serpin B |
| 13 |
Sobic.005G216833 |
- |
- |
| 14 |
Sobic.008G108100 |
- |
- |
| 15 |
Sobic.004G248000 |
expressed protein |
- |
| 16 |
Sobic.005G162200 |
cytochrome P450, putative, expressed |
K05917: sterol 14alpha-demethylase |
| 17 |
Sobic.003G261766 |
- |
- |
| 18 |
Sobic.001G377400 |
expressed protein |
- |
| 19 |
Sobic.004G149150 |
- |
- |
| 20 |
Sobic.007G014500 |
NB-ARC domain containing protein, expressed |
- |
Gene co-expression network
|
|
Octagon: transcription factors
