Gene annotation
Transcriptome id Sobic.009G115800.1
Synonym Sb09g018330
Functional annotation REX1 DNA Repair family protein, expressed
UniProt C5YX58
Pfam PF06331
Panther DB PTHR28580 PTHR28580:SF1
NCBI CDD KOG3451; Uncharacterized conserved protein
KEGG Orthology K10845; TTDA, GTF2H5, TFIIH basal transcription factor complex TTD-A subunit
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0006289nucleotide-excision repair GO:0000439transcription factor TFIIH core complex


Orthologs (automatic annotation)
TAIR AT1G12400 : Nucleotide excision repair, TFIIH, subunit TTDA
RAP-DB (Rice) LOC_Os05g10980.1 : REX1 DNA Repair family protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G261766 - -
2 Sobic.006G159500 serpin domain containing protein, putative, expressed K13963: serpin B
3 Sobic.005G216833 - -
4 Sobic.008G108100 - -
5 Sobic.005G041150 - -
6 Sobic.004G313000 leucine rich repeat containing protein, expressed -
7 Sobic.003G267150 - -
8 Sobic.002G319900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AAA family ATPase, putative, expressed K08900: mitochondrial chaperone BCS1
9 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
10 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
11 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
12 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
13 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
14 Sobic.006G099400 - -
15 Sobic.006G135550 - -
16 Sobic.004G262550 - -
17 Sobic.009G091940 - -
18 Sobic.009G236150 - -
19 Sobic.003G389150 - -
20 Sobic.006G083050 - -


Gene co-expression network
sample Sobic009G115800 Sobic009G115800 Sobic003G261766 Sobic003G261766 Sobic009G115800--Sobic003G261766 Sobic006G159500 Sobic006G159500 Sobic009G115800--Sobic006G159500 Sobic005G216833 Sobic005G216833 Sobic009G115800--Sobic005G216833 Sobic008G108100 Sobic008G108100 Sobic009G115800--Sobic008G108100 Sobic005G041150 Sobic005G041150 Sobic009G115800--Sobic005G041150 Sobic004G313000 Sobic004G313000 Sobic009G115800--Sobic004G313000 Sobic003G267150 Sobic003G267150 Sobic009G115800--Sobic003G267150 Sobic002G319900 Sobic002G319900 Sobic009G115800--Sobic002G319900 Sobic002G160500 Sobic002G160500 Sobic009G115800--Sobic002G160500 Sobic003G261766--Sobic009G115800 Sobic003G261766--Sobic006G159500 Sobic003G261766--Sobic005G216833 Sobic003G261766--Sobic005G041150 Sobic003G261766--Sobic008G108100 Sobic006G135550 Sobic006G135550 Sobic003G261766--Sobic006G135550 Sobic003G261766--Sobic004G313000 Sobic006G099400 Sobic006G099400 Sobic003G261766--Sobic006G099400 Sobic003G261766--Sobic003G267150 Sobic006G159500--Sobic009G115800 Sobic006G159500--Sobic003G261766 Sobic006G159500--Sobic004G313000 Sobic006G159500--Sobic003G267150 Sobic006G159500--Sobic005G216833 Sobic006G159500--Sobic002G319900 Sobic006G159500--Sobic002G160500 Sobic005G216833--Sobic004G313000 Sobic005G216833--Sobic009G115800 Sobic009G236150 Sobic009G236150 Sobic005G216833--Sobic009G236150 Sobic005G216833--Sobic003G261766 Sobic005G216833--Sobic003G267150 Sobic005G216833--Sobic006G159500 Sobic005G216833--Sobic008G108100 Sobic005G216833--Sobic002G160500 Sobic008G108100--Sobic003G267150 Sobic008G108100--Sobic009G115800 Sobic008G108100--Sobic002G160500 Sobic008G108100--Sobic004G313000 Sobic004G262550 Sobic004G262550 Sobic008G108100--Sobic004G262550 Sobic005G041150--Sobic009G115800 Sobic005G041150--Sobic003G261766 Sobic009G134700 Sobic009G134700 Sobic005G041150--Sobic009G134700 Sobic005G041150--Sobic006G099400 Sobic005G041150--Sobic006G159500 Sobic005G116800 Sobic005G116800 Sobic005G041150--Sobic005G116800 Sobic006G083050 Sobic006G083050 Sobic005G041150--Sobic006G083050 Sobic005G041150--Sobic008G108100 Sobic005G041150--Sobic006G135550 Sobic004G313000--Sobic003G267150 Sobic004G313000--Sobic002G160500 Sobic004G313000--Sobic004G262550 Sobic009G091940 Sobic009G091940 Sobic004G313000--Sobic009G091940 Sobic003G389150 Sobic003G389150 Sobic004G313000--Sobic003G389150 Sobic003G267150--Sobic002G160500 Sobic003G267150--Sobic004G262550 Sobic003G267150--Sobic009G091940 Sobic003G267150--Sobic004G313000 Sobic003G267150--Sobic003G389150 Sobic002G319900--Sobic003G267150 Sobic002G319900--Sobic002G160500 Sobic002G319900--Sobic004G262550 Sobic002G319900--Sobic004G313000 Sobic002G319900--Sobic009G091940 Sobic002G160500--Sobic002G160500 Sobic002G160500--Sobic003G267150 Sobic002G160500--Sobic004G262550 Sobic002G160500--Sobic009G091940 Sobic002G160500--Sobic003G389150 Sobic002G160500--Sobic004G313000
Octagon: transcription factors


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