Gene annotation
Transcriptome id Sobic.004G248000.1
Synonym Sb04g028780
Functional annotation expressed protein
UniProt C5XZA9
Pfam -
Panther DB PTHR33544 PTHR33544:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G17950 : -
RAP-DB (Rice) LOC_Os02g50050.1 : expressed protein
MaizeGDB (Corn) Zm00025a032663
Brachypodium KQK01585
Barley -
Wheat TraesCS6A02G295400 , TraesCS6B02G325500 , TraesCS6D02G276000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
2 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
3 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
4 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
5 Sobic.002G160500 - K07466: RFA1, RPA1, replication factor A1
6 Sobic.004G313000 leucine rich repeat containing protein, expressed -
7 Sobic.003G267150 - -
8 Sobic.004G262550 - -
9 Sobic.002G319900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AAA family ATPase, putative, expressed K08900: mitochondrial chaperone BCS1
10 Sobic.009G091940 - -
11 Sobic.003G389150 - -
12 Sobic.001G377400 expressed protein -
13 Sobic.005G162200 cytochrome P450, putative, expressed K05917: sterol 14alpha-demethylase
14 Sobic.006G159500 serpin domain containing protein, putative, expressed K13963: serpin B
15 Sobic.009G115800 REX1 DNA Repair family protein, expressed K10845: TTDA, GTF2H5, TFIIH basal transcription factor complex TTD-A subunit
16 Sobic.008G108100 - -
17 Sobic.004G149150 - -
18 Sobic.005G216833 - -
19 Sobic.003G261766 - -
20 Sobic.009G236150 - -


Gene co-expression network
sample Sobic004G248000 Sobic004G248000 Sobic002G160500 Sobic002G160500 Sobic004G248000--Sobic002G160500 Sobic004G313000 Sobic004G313000 Sobic004G248000--Sobic004G313000 Sobic003G267150 Sobic003G267150 Sobic004G248000--Sobic003G267150 Sobic004G262550 Sobic004G262550 Sobic004G248000--Sobic004G262550 Sobic002G319900 Sobic002G319900 Sobic004G248000--Sobic002G319900 Sobic002G160500--Sobic002G160500 Sobic002G160500--Sobic003G267150 Sobic002G160500--Sobic004G262550 Sobic009G091940 Sobic009G091940 Sobic002G160500--Sobic009G091940 Sobic003G389150 Sobic003G389150 Sobic002G160500--Sobic003G389150 Sobic002G160500--Sobic004G313000 Sobic004G313000--Sobic003G267150 Sobic004G313000--Sobic002G160500 Sobic004G313000--Sobic004G262550 Sobic004G313000--Sobic009G091940 Sobic004G313000--Sobic003G389150 Sobic003G267150--Sobic002G160500 Sobic003G267150--Sobic004G262550 Sobic003G267150--Sobic009G091940 Sobic003G267150--Sobic004G313000 Sobic003G267150--Sobic003G389150 Sobic004G262550--Sobic002G160500 Sobic004G262550--Sobic003G267150 Sobic004G262550--Sobic009G091940 Sobic004G262550--Sobic003G389150 Sobic004G262550--Sobic004G313000 Sobic002G319900--Sobic003G267150 Sobic002G319900--Sobic002G160500 Sobic002G319900--Sobic004G262550 Sobic002G319900--Sobic004G313000 Sobic002G319900--Sobic009G091940
Octagon: transcription factors


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