Gene annotation
Transcriptome id Sobic.003G281700.1
Synonym
Functional annotation pentatricopeptide, putative, expressed
UniProt C5XIF4
Pfam PF01535
Panther DB PTHR24015 PTHR24015:SF96
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G77170 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g20190.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G064000 expressed protein -
2 Sobic.003G126750 - -
3 Sobic.005G031901 - -
4 Sobic.004G358301 - -
5 Sobic.010G147300 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
6 Sobic.006G109600 - -
7 Sobic.001G261464 - -
8 Sobic.002G100100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.004G358200 RING-H2 finger protein, putative, expressed -
10 Sobic.002G175700 STE_MEK_ste7_MAP2K.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
11 Sobic.002G026150 - -
12 Sobic.002G153900 ZOS9-02 - C2H2 zinc finger protein, expressed -
13 Sobic.008G139250 - -
14 Sobic.004G243700 - -
15 Sobic.006G026300 expressed protein -
16 Sobic.006G151100 oxygen-evolving enhancer protein 3, chloroplast precursor, putative, expressed -
17 Sobic.007G007600 OsFBL38 - F-box domain and LRR containing protein, expressed -
18 Sobic.006G141400 expressed protein -
19 Sobic.007G067800 - -
20 Sobic.002G397650 - -


Gene co-expression network
sample Sobic003G281700 Sobic003G281700 Sobic007G064000 Sobic007G064000 Sobic003G281700--Sobic007G064000 Sobic003G126750 Sobic003G126750 Sobic003G281700--Sobic003G126750 Sobic005G031901 Sobic005G031901 Sobic003G281700--Sobic005G031901 Sobic004G358301 Sobic004G358301 Sobic003G281700--Sobic004G358301 Sobic010G147300 Sobic010G147300 Sobic003G281700--Sobic010G147300 Sobic006G109600 Sobic006G109600 Sobic003G281700--Sobic006G109600 Sobic001G261464 Sobic001G261464 Sobic003G281700--Sobic001G261464 Sobic002G100100 Sobic002G100100 Sobic003G281700--Sobic002G100100 Sobic004G358200 Sobic004G358200 Sobic003G281700--Sobic004G358200 Sobic007G064000--Sobic005G031901 Sobic002G175700 Sobic002G175700 Sobic007G064000--Sobic002G175700 Sobic007G064000--Sobic006G109600 Sobic007G064000--Sobic003G126750 Sobic007G064000--Sobic010G147300 Sobic007G064000--Sobic001G261464 Sobic007G064000--Sobic002G100100 Sobic007G007600 Sobic007G007600 Sobic007G064000--Sobic007G007600 Sobic007G064000--Sobic004G358200 Sobic003G126750--Sobic006G109600 Sobic003G126750--Sobic005G031901 Sobic002G026150 Sobic002G026150 Sobic003G126750--Sobic002G026150 Sobic003G126750--Sobic001G261464 Sobic003G126750--Sobic010G147300 Sobic003G126750--Sobic002G100100 Sobic003G126750--Sobic004G358301 Sobic004G243700 Sobic004G243700 Sobic003G126750--Sobic004G243700 Sobic002G153900 Sobic002G153900 Sobic003G126750--Sobic002G153900 Sobic005G031901--Sobic010G147300 Sobic005G031901--Sobic006G109600 Sobic005G031901--Sobic003G126750 Sobic005G031901--Sobic001G261464 Sobic005G031901--Sobic004G358301 Sobic005G031901--Sobic002G100100 Sobic005G031901--Sobic002G026150 Sobic005G031901--Sobic002G175700 Sobic005G031901--Sobic007G064000 Sobic004G358301--Sobic005G031901 Sobic004G358301--Sobic010G147300 Sobic004G358301--Sobic003G126750 Sobic004G358301--Sobic006G109600 Sobic004G358301--Sobic001G261464 Sobic004G358301--Sobic002G100100 Sobic004G358301--Sobic002G026150 Sobic004G358301--Sobic002G153900 Sobic004G358301--Sobic004G243700 Sobic010G147300--Sobic005G031901 Sobic010G147300--Sobic006G109600 Sobic010G147300--Sobic003G126750 Sobic010G147300--Sobic001G261464 Sobic010G147300--Sobic004G358301 Sobic010G147300--Sobic002G100100 Sobic010G147300--Sobic002G026150 Sobic010G147300--Sobic002G175700 Sobic010G147300--Sobic007G064000 Sobic006G109600--Sobic003G126750 Sobic006G109600--Sobic005G031901 Sobic006G109600--Sobic010G147300 Sobic006G109600--Sobic001G261464 Sobic006G109600--Sobic002G100100 Sobic006G109600--Sobic002G026150 Sobic006G109600--Sobic002G175700 Sobic006G109600--Sobic004G358301 Sobic006G109600--Sobic004G243700 Sobic001G261464--Sobic005G031901 Sobic001G261464--Sobic003G126750 Sobic001G261464--Sobic006G109600 Sobic001G261464--Sobic002G100100 Sobic001G261464--Sobic010G147300 Sobic001G261464--Sobic004G358200 Sobic001G261464--Sobic004G358301 Sobic001G261464--Sobic004G243700 Sobic001G261464--Sobic002G026150 Sobic002G100100--Sobic005G031901 Sobic002G100100--Sobic001G261464 Sobic002G100100--Sobic006G109600 Sobic002G100100--Sobic003G126750 Sobic002G100100--Sobic010G147300 Sobic006G026300 Sobic006G026300 Sobic002G100100--Sobic006G026300 Sobic002G100100--Sobic004G358301 Sobic002G100100--Sobic004G243700 Sobic002G100100--Sobic002G026150 Sobic004G358200--Sobic001G261464 Sobic004G358200--Sobic003G126750 Sobic004G358200--Sobic002G153900 Sobic004G358200--Sobic005G031901 Sobic004G358200--Sobic006G109600 Sobic004G358200--Sobic006G026300 Sobic004G358200--Sobic002G100100 Sobic004G358200--Sobic004G243700 Sobic004G358200--Sobic002G026150
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.