Gene annotation
Transcriptome id Sobic.003G422100.1
Synonym Sb03g045510
Functional annotation "beta-1,3-glucanase " (PubMedID : 25311645)
glycosyl hydrolases family 17, putative, expressed
UniProt C5XHS3
Pfam PF00332
Panther DB PTHR32227 PTHR32227:SF80
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT4G16260 : Glycosyl hydrolase superfamily protein
RAP-DB (Rice) LOC_Os01g71670.1 : glycosyl hydrolases family 17, putative, expressed
MaizeGDB (Corn) Zm00025a039154 , Zm00025a026061
Brachypodium -
Barley HORVU3Hr1G106140.1 , HORVU3Hr1G106140.3 , HORVU3Hr1G106140.2 , HORVU3Hr1G106140.4
Wheat TraesCS3B02G525000 , TraesCS3A02G480400 , TraesCS3A02G483000 , TraesCS3B02G528500 , TraesCS3B02G526100 , TraesCS3D02G477300 , TraesCS3B02G526000 , TraesCS3D02G478300 , TraesCS2D02G172300 , TraesCS3D02G475200 , TraesCS3B02G524700 , TraesCS3A02G482200 , TraesCS3B02G524800 , TraesCS3A02G483800 , TraesCS3A02G480200 , TraesCS3D02G478900 , TraesCS3A02G483700 , TraesCS3B02G530500 , TraesCS3D02G475000 , TraesCS3B02G530600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G143401 - -
2 Sobic.003G046900 expressed protein -
3 Sobic.003G242600 - -
4 Sobic.009G214700 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@bHelix-loop-helix transcription factor, putative, expressed -
5 Sobic.010G212900 expressed protein -
6 Sobic.003G429101 - -
7 Sobic.004G196000 late embryogenesis abundant protein D-34, putative, expressed -
8 Sobic.002G081000 OsMADS70 - MADS-box family gene with M-alpha type-box, expressed -
9 Sobic.008G192200 - -
10 Sobic.006G149650 - -
11 Sobic.003G049100 prolyl 4-hydroxylase, putative, expressed K00472: prolyl 4-hydroxylase
12 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
13 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
14 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
15 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
16 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
17 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
18 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
19 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
20 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic003G422100 Sobic003G422100 Sobic003G143401 Sobic003G143401 Sobic003G422100--Sobic003G143401 Sobic003G046900 Sobic003G046900 Sobic003G422100--Sobic003G046900 Sobic003G242600 Sobic003G242600 Sobic003G422100--Sobic003G242600 Sobic009G214700 Sobic009G214700 Sobic003G422100--Sobic009G214700 Sobic010G212900 Sobic010G212900 Sobic003G422100--Sobic010G212900 Sobic003G429101 Sobic003G429101 Sobic003G422100--Sobic003G429101 Sobic004G196000 Sobic004G196000 Sobic003G422100--Sobic004G196000 Sobic002G081000 Sobic002G081000 Sobic003G422100--Sobic002G081000 Sobic008G192200 Sobic008G192200 Sobic003G422100--Sobic008G192200 Sobic003G143401--Sobic003G422100 Sobic003G143401--Sobic002G081000 Sobic001G497750 Sobic001G497750 Sobic003G143401--Sobic001G497750 Sobic007G005800 Sobic007G005800 Sobic003G143401--Sobic007G005800 Sobic001G530650 Sobic001G530650 Sobic003G143401--Sobic001G530650 Sobic003G049100 Sobic003G049100 Sobic003G143401--Sobic003G049100 Sobic001G272300 Sobic001G272300 Sobic003G143401--Sobic001G272300 Sobic003G046900--Sobic004G196000 Sobic003G046900--Sobic008G192200 Sobic003G046900--Sobic001G272300 Sobic003G242600--Sobic003G422100 Sobic006G278950 Sobic006G278950 Sobic003G242600--Sobic006G278950 Sobic003G242600--Sobic003G429101 Sobic006G084100 Sobic006G084100 Sobic003G242600--Sobic006G084100 Sobic003G242600--Sobic003G046900 Sobic010G090800 Sobic010G090800 Sobic003G242600--Sobic010G090800 Sobic003G242600--Sobic010G212900 Sobic001G211000 Sobic001G211000 Sobic003G242600--Sobic001G211000 Sobic001G388100 Sobic001G388100 Sobic003G242600--Sobic001G388100 Sobic006G261000 Sobic006G261000 Sobic009G214700--Sobic006G261000 Sobic007G075200 Sobic007G075200 Sobic009G214700--Sobic007G075200 Sobic001G267950 Sobic001G267950 Sobic009G214700--Sobic001G267950 Sobic009G214700--Sobic003G046900 Sobic006G018500 Sobic006G018500 Sobic009G214700--Sobic006G018500 Sobic005G199500 Sobic005G199500 Sobic009G214700--Sobic005G199500 Sobic009G214700--Sobic003G049100 Sobic009G214700--Sobic004G196000 Sobic009G214700--Sobic008G192200 Sobic010G212900--Sobic003G046900 Sobic010G212900--Sobic004G196000 Sobic010G262650 Sobic010G262650 Sobic010G212900--Sobic010G262650 Sobic008G192100 Sobic008G192100 Sobic010G212900--Sobic008G192100 Sobic010G212900--Sobic008G192200 Sobic006G149650 Sobic006G149650 Sobic010G212900--Sobic006G149650 Sobic001G543000 Sobic001G543000 Sobic010G212900--Sobic001G543000 Sobic005G082950 Sobic005G082950 Sobic010G212900--Sobic005G082950 Sobic010G212900--Sobic002G081000 Sobic003G429101--Sobic003G046900 Sobic003G429101--Sobic010G212900 Sobic001G220066 Sobic001G220066 Sobic003G429101--Sobic001G220066 Sobic002G348200 Sobic002G348200 Sobic003G429101--Sobic002G348200 Sobic002G157350 Sobic002G157350 Sobic003G429101--Sobic002G157350 Sobic003G429101--Sobic004G196000 Sobic003G429101--Sobic009G214700 Sobic003G429101--Sobic006G149650 Sobic003G429101--Sobic008G192200 Sobic004G196000--Sobic008G192100 Sobic001G493300 Sobic001G493300 Sobic004G196000--Sobic001G493300 Sobic004G196000--Sobic008G192200 Sobic004G196000--Sobic001G272300 Sobic002G081000--Sobic001G272300 Sobic008G192200--Sobic001G272300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.