Gene annotation
| Transcriptome id | Sobic.005G092500.8,Sobic.005G092500.14,Sobic.005G092500.16,Sobic.005G092500.12,Sobic.005G092500.4,Sobic.005G092500.3,Sobic.005G092500.17,Sobic.005G092500.5,Sobic.005G092500.6,Sobic.005G092500.9,Sobic.005G092500.11,Sobic.005G092500.15,Sobic.005G092500.7,Sobic.005G092500.10,Sobic.005G092500.13 |
|---|---|
| Synonym | CAS1 |
| Functional annotation | cycloartenol synthase, putative, expressed |
| UniProt | A0A1Z5RHK5 , A0A1Z5RIG6 , A0A1Z5RHI3 , A0A1Z5RIP8 , A0A1B6PR67 , A0A1Z5RIF4 |
| Pfam | PF00432 PF13243 PF00432 |
| Panther DB | PTHR11764 |
| NCBI CDD | - |
| KEGG Orthology | K19010; parkeol synthase |
| Gene Ontology | GO:0003824; catalytic activity |
Orthologs (automatic annotation)
| TAIR | AT2G07050 : cycloartenol synthase 1,baruol synthase 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os11g08569.1 : cycloartenol synthase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a040489 , Zm00025a040492 |
| Brachypodium | - |
| Barley | HORVU5Hr1G122220.9 , HORVU5Hr1G122220.4 , HORVU5Hr1G122220.5 , HORVU5Hr1G122220.6 , HORVU5Hr1G122220.7 , HORVU5Hr1G122220.1 , HORVU5Hr1G122220.2 , HORVU5Hr1G122220.3 , HORVU5Hr1G122220.10 , HORVU5Hr1G122220.11 |
| Wheat | TraesCS5D02G011800 , TraesCS5A02G004900 , TraesCS5B02G545900 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G114501 | - | - |
| 2 | Sobic.004G042400 | expressed protein | - |
| 3 | Sobic.001G166401 | - | - |
| 4 | Sobic.005G110445 | - | - |
| 5 | Sobic.005G199300 | expressed protein | - |
| 6 | Sobic.006G132300 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CHIT3 - Chitinase family protein precursor, expressed | K01183: chitinase |
| 7 | Sobic.007G029800 | LTPL24 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 8 | Sobic.005G193100 | "alpha-kafirin locus, highly digestible high-lysine (hdhl) mutant P721Q"(PubMedID : 23948869)@- | - |
| 9 | Sobic.001G381250 | - | - |
| 10 | Sobic.001G381250 | - | - |
| 11 | Sobic.001G381250 | - | - |
| 12 | Sobic.001G381250 | - | - |
| 13 | Sobic.001G381250 | - | - |
| 14 | Sobic.001G381250 | - | - |
| 15 | Sobic.001G381250 | - | - |
| 16 | Sobic.001G381250 | - | - |
| 17 | Sobic.001G381250 | - | - |
| 18 | Sobic.001G381250 | - | - |
| 19 | Sobic.001G381250 | - | - |
| 20 | Sobic.001G381250 | - | - |
Gene co-expression network
Octagon: transcription factors
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