Gene annotation
| Transcriptome id | Sobic.005G178400.2 |
|---|---|
| Synonym | Sb05g023765 |
| Functional annotation | helix-loop-helix DNA-binding domain containing protein, expressed |
| UniProt | A0A1Z5RJF9 |
| Pfam | - |
| Panther DB | PTHR38546 PTHR38546:SF1 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G28857 : basic helix-loop-helix (bHLH) DNA-binding family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os11g39000.1 : helix-loop-helix DNA-binding domain containing protein, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G065900 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 2 | Sobic.001G381400 | expressed protein | - |
| 3 | Sobic.005G171001 | - | - |
| 4 | Sobic.002G388800 | cytochrome P450 72A1, putative, expressed | - |
| 5 | Sobic.004G094900 | expressed protein | - |
| 6 | Sobic.002G090100 | - | - |
| 7 | Sobic.002G090100 | - | - |
| 8 | Sobic.002G090100 | - | - |
| 9 | Sobic.002G090100 | - | - |
| 10 | Sobic.002G090100 | - | - |
| 11 | Sobic.002G090100 | - | - |
| 12 | Sobic.004G263100 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 13 | Sobic.002G102132 | - | - |
| 14 | Sobic.007G159100 | expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@tetraspanin family protein, putative, expressed | - |
| 15 | Sobic.002G390000 | dirigent, putative, expressed | - |
| 16 | Sobic.004G092800 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 17 | Sobic.004G165800 | zinc finger family protein, putative, expressed | - |
| 18 | Sobic.008G079500 | glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 19 | Sobic.002G238600 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@- | - |
| 20 | Sobic.004G251800 | leaf senescence related protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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