Gene annotation
Transcriptome id Sobic.006G147500.1
Synonym Sb06g022610, LSH4
Functional annotation DUF640 domain containing protein, putative, expressed
UniProt C5YC33
Pfam PF04852
Panther DB PTHR31165 PTHR31165:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G07090 : Protein of unknown function (DUF640)
RAP-DB (Rice) LOC_Os02g41460.1 : DUF640 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a021109 , Zm00025a041930 , Zm00025a022541 , Zm00025a017626 , Zm00025a037663 , Zm00025a032852 , Zm00025a056514 , Zm00025a043474 , Zm00025a010702 , Zm00025a051795
Brachypodium KQJ83599 , KQK00399 , KQK17088 , KQK17087 , KQK01266 , KQJ97098 , KQK00400
Barley HORVU1Hr1G070480.1 , HORVU1Hr1G070480.2 , HORVU7Hr1G106960.7 , HORVU7Hr1G106960.6 , HORVU7Hr1G106960.5 , HORVU7Hr1G106960.4 , HORVU7Hr1G106960.3 , HORVU7Hr1G106960.2 , HORVU1Hr1G060250.1 , HORVU2Hr1G089190.1 , HORVU2Hr1G089190.3 , HORVU2Hr1G089190.2 , HORVU2Hr1G089190.5 , HORVU2Hr1G089190.4 , HORVU2Hr1G089190.7 , HORVU2Hr1G089190.6 , HORVU2Hr1G089190.9 , HORVU2Hr1G089190.8 , HORVU6Hr1G058340.2 , HORVU6Hr1G058340.3 , HORVU6Hr1G088790.1 , HORVU6Hr1G088790.2 , HORVU6Hr1G088790.3 , HORVU6Hr1G088790.4 , HORVU6Hr1G088790.5 , HORVU6Hr1G088790.6
Wheat TraesCS1B02G235800 , TraesCS1A02G154900 , TraesCS1D02G294600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G102700 cytochrome P450, putative, expressed -
2 Sobic.001G188600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Rf1, mitochondrial precursor, putative, expressed -
3 Sobic.002G020100 chalcone synthase, putative, expressed -
4 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
5 Sobic.010G202700 AP2 domain containing protein, expressed K09284: AP2-like factor, euAP2 lineage
6 Sobic.001G069500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
7 Sobic.008G067400 - -
8 Sobic.004G109000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chalcone isomerase 3, putative, expressed -
9 Sobic.003G068300 transferase family protein, putative, expressed -
10 Sobic.006G114300 pentatricopeptide, putative, expressed -
11 Sobic.003G157500 oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
12 Sobic.004G019300 terpene synthase, putative, expressed K15086: (3S)-linalool synthase
13 Sobic.001G357200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
14 Sobic.002G415300 - -
15 Sobic.002G415400 - -
16 Sobic.008G030000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@elongation factor P, putative, expressed K02356: elongation factor P
17 Sobic.006G001400 Leucine Rich Repeat family protein, expressed -
18 Sobic.009G098100 T-complex protein, putative, expressed -
19 Sobic.005G162000 cytochrome P450, putative, expressed K05917: sterol 14alpha-demethylase
20 Sobic.004G253800 - -


Gene co-expression network
sample Sobic006G147500 Sobic006G147500 Sobic002G102700 Sobic002G102700 Sobic006G147500--Sobic002G102700 Sobic001G188600 Sobic001G188600 Sobic006G147500--Sobic001G188600 Sobic002G020100 Sobic002G020100 Sobic006G147500--Sobic002G020100 Sobic007G211100 Sobic007G211100 Sobic006G147500--Sobic007G211100 Sobic010G202700 Sobic010G202700 Sobic006G147500--Sobic010G202700 Sobic001G069500 Sobic001G069500 Sobic006G147500--Sobic001G069500 Sobic008G067400 Sobic008G067400 Sobic006G147500--Sobic008G067400 Sobic004G109000 Sobic004G109000 Sobic006G147500--Sobic004G109000 Sobic003G068300 Sobic003G068300 Sobic006G147500--Sobic003G068300 Sobic002G102700--Sobic006G147500 Sobic005G095640 Sobic005G095640 Sobic002G102700--Sobic005G095640 Sobic004G019300 Sobic004G019300 Sobic002G102700--Sobic004G019300 Sobic002G102700--Sobic003G068300 Sobic002G102700--Sobic007G211100 Sobic002G102700--Sobic010G202700 Sobic002G102700--Sobic001G188600 Sobic002G102700--Sobic008G067400 Sobic005G165400 Sobic005G165400 Sobic002G102700--Sobic005G165400 Sobic001G188600--Sobic001G069500 Sobic006G114300 Sobic006G114300 Sobic001G188600--Sobic006G114300 Sobic001G357200 Sobic001G357200 Sobic001G188600--Sobic001G357200 Sobic009G098100 Sobic009G098100 Sobic001G188600--Sobic009G098100 Sobic010G012900 Sobic010G012900 Sobic001G188600--Sobic010G012900 Sobic001G188600--Sobic004G109000 Sobic001G188600--Sobic007G211100 Sobic004G253800 Sobic004G253800 Sobic001G188600--Sobic004G253800 Sobic008G030000 Sobic008G030000 Sobic001G188600--Sobic008G030000 Sobic001G003600 Sobic001G003600 Sobic002G020100--Sobic001G003600 Sobic006G172700 Sobic006G172700 Sobic002G020100--Sobic006G172700 Sobic005G056201 Sobic005G056201 Sobic002G020100--Sobic005G056201 Sobic004G076000 Sobic004G076000 Sobic002G020100--Sobic004G076000 Sobic009G115050 Sobic009G115050 Sobic002G020100--Sobic009G115050 Sobic009G059100 Sobic009G059100 Sobic002G020100--Sobic009G059100 Sobic002G329500 Sobic002G329500 Sobic002G020100--Sobic002G329500 Sobic002G020100--Sobic009G098100 Sobic001G435600 Sobic001G435600 Sobic002G020100--Sobic001G435600 Sobic007G211100--Sobic001G069500 Sobic007G013400 Sobic007G013400 Sobic007G211100--Sobic007G013400 Sobic003G383500 Sobic003G383500 Sobic007G211100--Sobic003G383500 Sobic009G001500 Sobic009G001500 Sobic007G211100--Sobic009G001500 Sobic007G211100--Sobic004G109000 Sobic007G211100--Sobic001G188600 Sobic003G295800 Sobic003G295800 Sobic007G211100--Sobic003G295800 Sobic008G123600 Sobic008G123600 Sobic007G211100--Sobic008G123600 Sobic007G211100--Sobic009G098100 Sobic006G001400 Sobic006G001400 Sobic010G202700--Sobic006G001400 Sobic005G196500 Sobic005G196500 Sobic010G202700--Sobic005G196500 Sobic007G037700 Sobic007G037700 Sobic010G202700--Sobic007G037700 Sobic006G233600 Sobic006G233600 Sobic010G202700--Sobic006G233600 Sobic010G202700--Sobic001G188600 Sobic010G202700--Sobic006G147500 Sobic010G107200 Sobic010G107200 Sobic010G202700--Sobic010G107200 Sobic001G172300 Sobic001G172300 Sobic010G202700--Sobic001G172300 Sobic001G275800 Sobic001G275800 Sobic010G202700--Sobic001G275800 Sobic001G069500--Sobic009G098100 Sobic001G069500--Sobic001G188600 Sobic001G069500--Sobic007G211100 Sobic001G069500--Sobic003G295800 Sobic003G383600 Sobic003G383600 Sobic001G069500--Sobic003G383600 Sobic001G069500--Sobic008G123600 Sobic001G069500--Sobic009G001500 Sobic001G069500--Sobic008G030000 Sobic001G069500--Sobic007G013400 Sobic008G067400--Sobic003G068300 Sobic002G415400 Sobic002G415400 Sobic008G067400--Sobic002G415400 Sobic002G415300 Sobic002G415300 Sobic008G067400--Sobic002G415300 Sobic008G163200 Sobic008G163200 Sobic008G067400--Sobic008G163200 Sobic005G212400 Sobic005G212400 Sobic008G067400--Sobic005G212400 Sobic008G067400--Sobic002G329500 Sobic008G067400--Sobic009G115050 Sobic008G067400--Sobic005G165400 Sobic008G067400--Sobic001G435600 Sobic004G109000--Sobic001G188600 Sobic004G109000--Sobic007G211100 Sobic004G109000--Sobic006G114300 Sobic004G109000--Sobic003G383500 Sobic004G109000--Sobic009G059100 Sobic004G109000--Sobic001G069500 Sobic006G025700 Sobic006G025700 Sobic004G109000--Sobic006G025700 Sobic004G109000--Sobic007G013400 Sobic001G215300 Sobic001G215300 Sobic004G109000--Sobic001G215300 Sobic003G068300--Sobic002G415300 Sobic003G068300--Sobic002G415400 Sobic003G068300--Sobic008G163200 Sobic001G255300 Sobic001G255300 Sobic003G068300--Sobic001G255300 Sobic009G206000 Sobic009G206000 Sobic003G068300--Sobic009G206000 Sobic004G060700 Sobic004G060700 Sobic003G068300--Sobic004G060700 Sobic006G238100 Sobic006G238100 Sobic003G068300--Sobic006G238100 Sobic002G416950 Sobic002G416950 Sobic003G068300--Sobic002G416950 Sobic004G328900 Sobic004G328900 Sobic003G068300--Sobic004G328900
Octagon: transcription factors


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