Gene annotation
Transcriptome id Sobic.006G175700.5,Sobic.006G175700.10,Sobic.006G175700.14,Sobic.006G175700.16,Sobic.006G175700.17,Sobic.006G175700.2,Sobic.006G175700.22,Sobic.006G175700.4,Sobic.006G175700.1,Sobic.006G175700.3,Sobic.006G175700.19,Sobic.006G175700.23,Sobic.006G175700.18,Sobic.006G175700.24,Sobic.006G175700.7,Sobic.006G175700.21,Sobic.006G175700.20,Sobic.006G175700.25,Sobic.006G175700.15
Synonym BHLH42, Sb06g025060,basic helix-loop-helix (bHLH) transcription factor, TT8, SbTT8
Functional annotation down-regulated TF in developmental senescence (PubMedID : 27586543)
putative basic helix-loop-helix (bHLH) transcription factor(PubmedID : 24048646)
anthocyanin regulatory Lc protein, putative, expressed
UniProt A0A1B6PMI0 , A0A1B6PMK3 , C5YDM3 , A0A1B6PMG8 , A0A1B6PMJ5 , A0A1B6PMJ4
Pfam PF14215 PF00010 PF14215
Panther DB PTHR11514 PTHR11514:SF37
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G63650 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os04g47080.1 : anthocyanin regulatory Lc protein, putative, expressed
MaizeGDB (Corn) Zm00025a010250 , Zm00025a056836
Brachypodium -
Barley HORVU2Hr1G096810.4 , HORVU2Hr1G096810.5 , HORVU2Hr1G096810.6 , HORVU2Hr1G096810.1 , HORVU2Hr1G096810.2 , HORVU2Hr1G096810.3
Wheat TraesCSU02G029400 , TraesCSU02G029400 , TraesCSU02G029400 , TraesCSU02G029400 , TraesCS4B02G397400 , TraesCS4B02G397400 , TraesCS4D02G224600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G190800 Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed K05928: tocopherol O-methyltransferase
2 Sobic.008G030700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@LTPL7 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
3 Sobic.002G278800 ribonuclease T2 family domain containing protein, expressed K01166: ribonuclease T2
4 Sobic.003G007800 phosphorylase domain containing protein, putative, expressed -
5 Sobic.001G249500 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
6 Sobic.001G338000 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
7 Sobic.002G128600 lecithin:cholesterol acyltransferase, putative, expressed K06129: lysophospholipase III
8 Sobic.003G131800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@major facilitator superfamily antiporter, putative, expressed -
9 Sobic.002G278700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ribonuclease T2 family domain containing protein, expressed K01166: ribonuclease T2
10 Sobic.006G227000 leucoanthocyanidin reductase, putative, expressed K08695: anthocyanidin reductase
11 Sobic.003G173700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@fatty acid hydroxylase, putative, expressed K14423: plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase
12 Sobic.009G070700 Acid phosphatase class B family protein(PubMedID : 26320239)@HAD superfamily phosphatase, putative, expressed -
13 Sobic.003G317800 lysM domain containing protein, putative -
14 Sobic.001G332966 - -
15 Sobic.007G195300 thioesterase family protein, putative, expressed K17362: acyl-coenzyme A thioesterase 13
16 Sobic.010G012400 anthocyanidin 3-O-glucosyltransferase, putative, expressed -
17 Sobic.001G249600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
18 Sobic.009G136500 Major facilitator superfamily protein("PubMedID : 26759170,PubMedID : 24597475")@peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
19 Sobic.004G328900 expressed protein -
20 Sobic.008G189500 similar to Secretory acid phosphatase - Pfam Calcineurin-like phosphoesterase(PubMedID : 24655390)@similar to Secretory acid phosphatase - Pfam Calcineurin -like phosphoesterase(PubMedID : 24655390)@Ser/Thr protein phosphatase family protein, putative, expressed -


Gene co-expression network
sample Sobic006G175700 Sobic006G175700 Sobic005G190800 Sobic005G190800 Sobic006G175700--Sobic005G190800 Sobic008G030700 Sobic008G030700 Sobic006G175700--Sobic008G030700 Sobic002G278800 Sobic002G278800 Sobic006G175700--Sobic002G278800 Sobic003G007800 Sobic003G007800 Sobic006G175700--Sobic003G007800 Sobic001G249500 Sobic001G249500 Sobic006G175700--Sobic001G249500 Sobic001G338000 Sobic001G338000 Sobic006G175700--Sobic001G338000 Sobic002G128600 Sobic002G128600 Sobic006G175700--Sobic002G128600 Sobic003G131800 Sobic003G131800 Sobic006G175700--Sobic003G131800 Sobic002G278700 Sobic002G278700 Sobic006G175700--Sobic002G278700 Sobic005G190800--Sobic006G175700 Sobic005G190800--Sobic002G128600 Sobic005G190800--Sobic003G007800 Sobic006G227000 Sobic006G227000 Sobic005G190800--Sobic006G227000 Sobic005G190800--Sobic001G249500 Sobic003G317800 Sobic003G317800 Sobic005G190800--Sobic003G317800 Sobic004G038300 Sobic004G038300 Sobic005G190800--Sobic004G038300 Sobic004G328900 Sobic004G328900 Sobic005G190800--Sobic004G328900 Sobic007G069500 Sobic007G069500 Sobic005G190800--Sobic007G069500 Sobic008G030700--Sobic006G175700 Sobic008G030700--Sobic002G278800 Sobic008G030700--Sobic002G278700 Sobic008G030700--Sobic001G249500 Sobic008G030700--Sobic003G131800 Sobic010G012400 Sobic010G012400 Sobic008G030700--Sobic010G012400 Sobic008G030700--Sobic005G190800 Sobic001G535600 Sobic001G535600 Sobic008G030700--Sobic001G535600 Sobic003G173700 Sobic003G173700 Sobic008G030700--Sobic003G173700 Sobic002G278800--Sobic002G278700 Sobic002G278800--Sobic003G173700 Sobic001G332966 Sobic001G332966 Sobic002G278800--Sobic001G332966 Sobic002G278800--Sobic003G131800 Sobic002G278800--Sobic008G030700 Sobic002G278800--Sobic006G175700 Sobic002G278800--Sobic010G012400 Sobic002G278800--Sobic001G338000 Sobic009G136500 Sobic009G136500 Sobic002G278800--Sobic009G136500 Sobic008G189500 Sobic008G189500 Sobic003G007800--Sobic008G189500 Sobic001G255300 Sobic001G255300 Sobic003G007800--Sobic001G255300 Sobic003G007800--Sobic005G190800 Sobic003G007800--Sobic006G175700 Sobic003G007800--Sobic004G328900 Sobic003G007800--Sobic003G317800 Sobic003G007800--Sobic002G128600 Sobic005G029400 Sobic005G029400 Sobic003G007800--Sobic005G029400 Sobic003G007800--Sobic004G038300 Sobic001G249500--Sobic006G227000 Sobic001G249500--Sobic002G128600 Sobic001G249500--Sobic006G175700 Sobic001G249500--Sobic008G030700 Sobic001G249500--Sobic005G190800 Sobic001G249600 Sobic001G249600 Sobic001G249500--Sobic001G249600 Sobic001G249500--Sobic007G069500 Sobic001G249500--Sobic003G007800 Sobic007G195300 Sobic007G195300 Sobic001G249500--Sobic007G195300 Sobic001G338000--Sobic001G332966 Sobic001G338000--Sobic002G278800 Sobic001G338000--Sobic006G175700 Sobic003G006866 Sobic003G006866 Sobic001G338000--Sobic003G006866 Sobic001G338000--Sobic003G173700 Sobic001G338000--Sobic002G278700 Sobic001G338000--Sobic005G190800 Sobic001G338000--Sobic003G131800 Sobic001G338000--Sobic008G030700 Sobic002G128600--Sobic006G227000 Sobic002G128600--Sobic003G317800 Sobic002G128600--Sobic007G069500 Sobic002G128600--Sobic005G190800 Sobic002G128600--Sobic001G249500 Sobic002G128600--Sobic004G328900 Sobic001G379300 Sobic001G379300 Sobic002G128600--Sobic001G379300 Sobic002G128600--Sobic001G255300 Sobic002G128600--Sobic003G007800 Sobic003G131800--Sobic002G278700 Sobic003G131800--Sobic002G278800 Sobic003G131800--Sobic008G030700 Sobic003G131800--Sobic006G175700 Sobic003G131800--Sobic007G195300 Sobic003G131800--Sobic010G012400 Sobic003G131800--Sobic003G173700 Sobic003G131800--Sobic001G249500 Sobic003G131800--Sobic009G136500 Sobic002G278700--Sobic002G278800 Sobic002G278700--Sobic010G012400 Sobic002G278700--Sobic003G131800 Sobic002G278700--Sobic008G030700 Sobic002G278700--Sobic003G173700 Sobic002G278700--Sobic001G332966 Sobic002G278700--Sobic006G175700 Sobic002G278700--Sobic009G136500 Sobic002G278700--Sobic001G338000
Octagon: transcription factors


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