Gene annotation
| Transcriptome id | Sobic.001G332966.1 |
|---|---|
| Synonym | - |
| Functional annotation | - |
| UniProt | A0A1Z5S8V9 |
| Pfam | PF00098 |
| Panther DB | PTHR23002 PTHR23002:SF63 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0008270; zinc ion binding GO:0003676nucleic acid binding |
Orthologs (automatic annotation)
| TAIR | - |
|---|---|
| RAP-DB (Rice) | LOC_Os04g45890.1 : retrotransposon protein, putative, unclassified, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G278800 | ribonuclease T2 family domain containing protein, expressed | K01166: ribonuclease T2 |
| 2 | Sobic.001G338000 | oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase |
| 3 | Sobic.003G006866 | - | - |
| 4 | Sobic.003G173700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@fatty acid hydroxylase, putative, expressed | K14423: plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase |
| 5 | Sobic.002G278700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ribonuclease T2 family domain containing protein, expressed | K01166: ribonuclease T2 |
| 6 | Sobic.003G131800 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@major facilitator superfamily antiporter, putative, expressed | - |
| 7 | Sobic.006G175700 | down-regulated TF in developmental senescence(PubMedID : 27586543)@putative basic helix-loop-helix (bHLH) transcription factor(PubmedID : 24048646)@anthocyanin regulatory Lc protein, putative, expressed | - |
| 8 | Sobic.009G136500 | Major facilitator superfamily protein("PubMedID : 26759170,PubMedID : 24597475")@peptide transporter PTR2, putative, expressed | K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4 |
| 9 | Sobic.008G030700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@LTPL7 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 10 | Sobic.010G012400 | anthocyanidin 3-O-glucosyltransferase, putative, expressed | - |
| 11 | Sobic.007G195300 | thioesterase family protein, putative, expressed | K17362: acyl-coenzyme A thioesterase 13 |
| 12 | Sobic.005G190800 | Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed | K05928: tocopherol O-methyltransferase |
| 13 | Sobic.003G007800 | phosphorylase domain containing protein, putative, expressed | - |
| 14 | Sobic.001G068600 | app1, putative, expressed | - |
| 15 | Sobic.004G335500 | "P-(S)-hydroxymandelonitrile lyase, up-regulated under drought stress "(PubMedID : 24655390)@OsSCP1 - Putative Serine Carboxypeptidase homologue, expressed | - |
| 16 | Sobic.001G249500 | glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 17 | Sobic.009G136700 | peptide transporter PTR2, putative, expressed | K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4 |
| 18 | Sobic.008G136500 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | - |
| 19 | Sobic.009G070700 | Acid phosphatase class B family protein(PubMedID : 26320239)@HAD superfamily phosphatase, putative, expressed | - |
| 20 | Sobic.002G366500 | anthocyanin 3-O-beta-glucosyltransferase, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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