Gene annotation
| Transcriptome id | Sobic.001G068600.2 |
|---|---|
| Synonym | Sb01g006210 |
| Functional annotation | app1, putative, expressed |
| UniProt | A0A1Z5S4P6 |
| Pfam | - |
| Panther DB | PTHR33088 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G09520 : hydroxyproline-rich glycoprotein family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os03g56930.1 : app1, putative, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.001G068600 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G335500 | "P-(S)-hydroxymandelonitrile lyase, up-regulated under drought stress "(PubMedID : 24655390)@OsSCP1 - Putative Serine Carboxypeptidase homologue, expressed | - |
| 2 | Sobic.008G189500 | similar to Secretory acid phosphatase - Pfam Calcineurin-like phosphoesterase(PubMedID : 24655390)@similar to Secretory acid phosphatase - Pfam Calcineurin -like phosphoesterase(PubMedID : 24655390)@Ser/Thr protein phosphatase family protein, putative, expressed | - |
| 3 | Sobic.003G007800 | phosphorylase domain containing protein, putative, expressed | - |
| 4 | Sobic.006G175700 | down-regulated TF in developmental senescence(PubMedID : 27586543)@putative basic helix-loop-helix (bHLH) transcription factor(PubmedID : 24048646)@anthocyanin regulatory Lc protein, putative, expressed | - |
| 5 | Sobic.001G363700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | - |
| 6 | Sobic.005G029400 | strictosidine synthase, putative, expressed | - |
| 7 | Sobic.008G030700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@LTPL7 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 8 | Sobic.005G190800 | Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed | K05928: tocopherol O-methyltransferase |
| 9 | Sobic.002G128600 | lecithin:cholesterol acyltransferase, putative, expressed | K06129: lysophospholipase III |
| 10 | Sobic.004G257700 | aspartic proteinase nepenthesin-1 precursor, putative, expressed | - |
| 11 | Sobic.001G472000 | Polyamine oxidase 1("PubMedID : 26759170,PubMedID : 24597475")@amine oxidase, flavin-containing, domain containing protein, expressed | K13366: MPAO, polyamine oxidase |
| 12 | Sobic.001G255300 | Protein tyrosine decarboxylase 4 (OS)(PubMedID : 27208977)@decarboxylase, putative, expressed | K01592: tyrosine decarboxylase |
| 13 | Sobic.009G070600 | HAD superfamily phosphatase, putative, expressed | - |
| 14 | Sobic.003G131800 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@major facilitator superfamily antiporter, putative, expressed | - |
| 15 | Sobic.001G249500 | glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 16 | Sobic.002G278800 | ribonuclease T2 family domain containing protein, expressed | K01166: ribonuclease T2 |
| 17 | Sobic.003G287000 | BURP domain containing protein, expressed | - |
| 18 | Sobic.001G338000 | oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase |
| 19 | Sobic.002G207900 | WAX2, putative, expressed | - |
| 20 | Sobic.005G036500 | AGC_PVPK_like_kin82y.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed | - |
Gene co-expression network
Octagon: transcription factors
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