Gene annotation
Transcriptome id Sobic.003G006866.1
Synonym -
Functional annotation -
UniProt C6JS98 , A0A1W0VV87
Pfam -
Panther DB PTHR25952 PTHR25952:SF206
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os07g48590.1 : retrotransposon protein, putative, unclassified
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G332966 - -
2 Sobic.001G338000 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
3 Sobic.002G278800 ribonuclease T2 family domain containing protein, expressed K01166: ribonuclease T2
4 Sobic.003G173700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@fatty acid hydroxylase, putative, expressed K14423: plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase
5 Sobic.002G278700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ribonuclease T2 family domain containing protein, expressed K01166: ribonuclease T2
6 Sobic.003G131800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@major facilitator superfamily antiporter, putative, expressed -
7 Sobic.006G175700 down-regulated TF in developmental senescence(PubMedID : 27586543)@putative basic helix-loop-helix (bHLH) transcription factor(PubmedID : 24048646)@anthocyanin regulatory Lc protein, putative, expressed -
8 Sobic.009G136500 Major facilitator superfamily protein("PubMedID : 26759170,PubMedID : 24597475")@peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
9 Sobic.008G030700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@LTPL7 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
10 Sobic.010G012400 anthocyanidin 3-O-glucosyltransferase, putative, expressed -
11 Sobic.007G195300 thioesterase family protein, putative, expressed K17362: acyl-coenzyme A thioesterase 13
12 Sobic.003G007800 phosphorylase domain containing protein, putative, expressed -
13 Sobic.005G190800 Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed K05928: tocopherol O-methyltransferase
14 Sobic.008G136500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
15 Sobic.001G068600 app1, putative, expressed -
16 Sobic.004G335500 "P-(S)-hydroxymandelonitrile lyase, up-regulated under drought stress "(PubMedID : 24655390)@OsSCP1 - Putative Serine Carboxypeptidase homologue, expressed -
17 Sobic.009G136700 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
18 Sobic.001G249500 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
19 Sobic.006G074300 LTPL102 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
20 Sobic.009G070700 Acid phosphatase class B family protein(PubMedID : 26320239)@HAD superfamily phosphatase, putative, expressed -


Gene co-expression network
sample Sobic003G006866 Sobic003G006866 Sobic001G332966 Sobic001G332966 Sobic003G006866--Sobic001G332966 Sobic001G338000 Sobic001G338000 Sobic003G006866--Sobic001G338000 Sobic002G278800 Sobic002G278800 Sobic003G006866--Sobic002G278800 Sobic003G173700 Sobic003G173700 Sobic003G006866--Sobic003G173700 Sobic002G278700 Sobic002G278700 Sobic003G006866--Sobic002G278700 Sobic003G131800 Sobic003G131800 Sobic003G006866--Sobic003G131800 Sobic006G175700 Sobic006G175700 Sobic003G006866--Sobic006G175700 Sobic009G136500 Sobic009G136500 Sobic003G006866--Sobic009G136500 Sobic008G030700 Sobic008G030700 Sobic003G006866--Sobic008G030700 Sobic001G332966--Sobic002G278800 Sobic001G332966--Sobic001G338000 Sobic001G332966--Sobic003G006866 Sobic001G332966--Sobic003G173700 Sobic001G332966--Sobic002G278700 Sobic001G332966--Sobic003G131800 Sobic001G332966--Sobic006G175700 Sobic001G332966--Sobic009G136500 Sobic001G332966--Sobic008G030700 Sobic001G338000--Sobic001G332966 Sobic001G338000--Sobic002G278800 Sobic001G338000--Sobic006G175700 Sobic001G338000--Sobic003G006866 Sobic001G338000--Sobic003G173700 Sobic001G338000--Sobic002G278700 Sobic005G190800 Sobic005G190800 Sobic001G338000--Sobic005G190800 Sobic001G338000--Sobic003G131800 Sobic001G338000--Sobic008G030700 Sobic002G278800--Sobic002G278700 Sobic002G278800--Sobic003G173700 Sobic002G278800--Sobic001G332966 Sobic002G278800--Sobic003G131800 Sobic002G278800--Sobic008G030700 Sobic002G278800--Sobic006G175700 Sobic010G012400 Sobic010G012400 Sobic002G278800--Sobic010G012400 Sobic002G278800--Sobic001G338000 Sobic002G278800--Sobic009G136500 Sobic003G173700--Sobic009G136500 Sobic003G173700--Sobic002G278800 Sobic003G173700--Sobic002G278700 Sobic003G173700--Sobic001G332966 Sobic003G173700--Sobic006G175700 Sobic003G173700--Sobic001G338000 Sobic003G173700--Sobic008G030700 Sobic003G173700--Sobic003G131800 Sobic003G173700--Sobic010G012400 Sobic002G278700--Sobic002G278800 Sobic002G278700--Sobic010G012400 Sobic002G278700--Sobic003G131800 Sobic002G278700--Sobic008G030700 Sobic002G278700--Sobic003G173700 Sobic002G278700--Sobic001G332966 Sobic002G278700--Sobic006G175700 Sobic002G278700--Sobic009G136500 Sobic002G278700--Sobic001G338000 Sobic003G131800--Sobic002G278700 Sobic003G131800--Sobic002G278800 Sobic003G131800--Sobic008G030700 Sobic003G131800--Sobic006G175700 Sobic007G195300 Sobic007G195300 Sobic003G131800--Sobic007G195300 Sobic003G131800--Sobic010G012400 Sobic003G131800--Sobic003G173700 Sobic001G249500 Sobic001G249500 Sobic003G131800--Sobic001G249500 Sobic003G131800--Sobic009G136500 Sobic006G175700--Sobic005G190800 Sobic006G175700--Sobic008G030700 Sobic006G175700--Sobic002G278800 Sobic003G007800 Sobic003G007800 Sobic006G175700--Sobic003G007800 Sobic006G175700--Sobic001G249500 Sobic006G175700--Sobic001G338000 Sobic002G128600 Sobic002G128600 Sobic006G175700--Sobic002G128600 Sobic006G175700--Sobic003G131800 Sobic006G175700--Sobic002G278700 Sobic009G136500--Sobic003G173700 Sobic009G136500--Sobic002G278800 Sobic009G136500--Sobic002G278700 Sobic009G136500--Sobic003G131800 Sobic009G136500--Sobic008G030700 Sobic009G136500--Sobic006G175700 Sobic009G136500--Sobic010G012400 Sobic009G136500--Sobic001G332966 Sobic009G136500--Sobic007G195300 Sobic008G030700--Sobic006G175700 Sobic008G030700--Sobic002G278800 Sobic008G030700--Sobic002G278700 Sobic008G030700--Sobic001G249500 Sobic008G030700--Sobic003G131800 Sobic008G030700--Sobic010G012400 Sobic008G030700--Sobic005G190800 Sobic001G535600 Sobic001G535600 Sobic008G030700--Sobic001G535600 Sobic008G030700--Sobic003G173700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.