Gene annotation
Transcriptome id Sobic.009G062701.1,Sobic.009G062701.5,Sobic.009G062701.6,Sobic.009G062701.8,Sobic.009G062701.7,Sobic.009G062701.9,Sobic.009G062701.3,Sobic.009G062701.2,Sobic.009G062701.4
Synonym -
Functional annotation -
UniProt A0A1Z5R277 , A0A1Z5R175 , A0A1Z5R266 , A0A1Z5R1W5
Pfam PF01486
Panther DB PTHR11945 PTHR11945:SF206
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os03g11614.1 : OsMADS1 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G014100 OsFBX212 - F-box domain containing protein, expressed -
2 Sobic.005G133750 - -
3 Sobic.010G143666 - -
4 Sobic.003G281000 - -
5 Sobic.006G247200 AMP-binding enzyme, putative, expressed -
6 Sobic.002G069300 DNA binding protein, putative, expressed -
7 Sobic.002G202050 - -
8 Sobic.002G202050 - -
9 Sobic.002G202050 - -
10 Sobic.002G202050 - -
11 Sobic.003G137000 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.003G155700 transcription initiation factor IID, 18kD subunit family protein, expressed K03127: transcription initiation factor TFIID subunit 13
13 Sobic.002G344800 - -
14 Sobic.002G382200 - -
15 Sobic.004G178550 - -
16 Sobic.004G296750 - -
17 Sobic.003G111700 - -
18 Sobic.010G011500 - -
19 Sobic.002G124832 - -
20 Sobic.006G142925 - -


Gene co-expression network
sample Sobic009G062701 Sobic009G062701 Sobic002G014100 Sobic002G014100 Sobic009G062701--Sobic002G014100 Sobic005G133750 Sobic005G133750 Sobic009G062701--Sobic005G133750 Sobic010G143666 Sobic010G143666 Sobic009G062701--Sobic010G143666 Sobic003G281000 Sobic003G281000 Sobic009G062701--Sobic003G281000 Sobic006G247200 Sobic006G247200 Sobic009G062701--Sobic006G247200 Sobic002G069300 Sobic002G069300 Sobic009G062701--Sobic002G069300 Sobic002G202050 Sobic002G202050 Sobic009G062701--Sobic002G202050 Sobic002G014100--Sobic002G202050 Sobic002G014100--Sobic010G143666 Sobic002G014100--Sobic006G247200 Sobic002G382200 Sobic002G382200 Sobic002G014100--Sobic002G382200 Sobic002G344800 Sobic002G344800 Sobic002G014100--Sobic002G344800 Sobic002G014100--Sobic003G281000 Sobic005G133750--Sobic002G202050 Sobic005G133750--Sobic006G247200 Sobic005G133750--Sobic002G382200 Sobic005G133750--Sobic002G014100 Sobic005G133750--Sobic002G344800 Sobic005G133750--Sobic010G143666 Sobic010G143666--Sobic002G202050 Sobic010G143666--Sobic002G014100 Sobic010G143666--Sobic006G247200 Sobic010G143666--Sobic002G069300 Sobic010G143666--Sobic003G281000 Sobic010G143666--Sobic002G344800 Sobic004G296750 Sobic004G296750 Sobic003G281000--Sobic004G296750 Sobic003G281000--Sobic010G143666 Sobic001G480900 Sobic001G480900 Sobic003G281000--Sobic001G480900 Sobic003G281000--Sobic002G014100 Sobic003G281000--Sobic002G202050 Sobic003G281000--Sobic006G247200 Sobic006G247200--Sobic002G202050 Sobic006G247200--Sobic002G344800 Sobic006G247200--Sobic010G143666 Sobic006G247200--Sobic002G014100 Sobic006G247200--Sobic002G382200 Sobic006G247200--Sobic005G133750 Sobic006G142925 Sobic006G142925 Sobic002G069300--Sobic006G142925 Sobic002G069300--Sobic010G143666 Sobic002G069300--Sobic002G014100 Sobic002G069300--Sobic003G281000 Sobic002G069300--Sobic002G202050 Sobic002G069300--Sobic006G247200 Sobic002G202050--Sobic002G202050 Sobic002G202050--Sobic006G247200 Sobic002G202050--Sobic002G344800 Sobic002G202050--Sobic002G014100 Sobic002G202050--Sobic010G143666 Sobic002G202050--Sobic002G382200 Sobic002G202050--Sobic005G133750
Octagon: transcription factors


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