Gene annotation
| Transcriptome id | Sobic.010G246300.1 |
|---|---|
| Synonym | ATL43, Sb10g028540 |
| Functional annotation | Zinc finger, C3HC4 type domain containing protein, expressed |
| UniProt | C5Z8T1 |
| Pfam | PF13639 |
| Panther DB | PTHR14155 PTHR14155:SF78 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0008270; zinc ion binding GO:0005515protein binding |
Orthologs (automatic annotation)
| TAIR | AT5G05810 : RING/U-box superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os06g48065.1 : Zinc finger, C3HC4 type domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a018307 |
| Brachypodium | KQK17334 |
| Barley | HORVU7Hr1G098470.1 , HORVU1Hr1G052060.2 , HORVU1Hr1G052060.3 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G206501 | - | - |
| 2 | Sobic.002G266700 | - | - |
| 3 | Sobic.008G102466 | - | - |
| 4 | Sobic.002G382200 | - | - |
| 5 | Sobic.002G344800 | - | - |
| 6 | Sobic.010G143666 | - | - |
| 7 | Sobic.002G202050 | - | - |
| 8 | Sobic.002G202050 | - | - |
| 9 | Sobic.002G202050 | - | - |
| 10 | Sobic.002G202050 | - | - |
| 11 | Sobic.006G247200 | AMP-binding enzyme, putative, expressed | - |
| 12 | Sobic.003G281000 | - | - |
| 13 | Sobic.002G014100 | OsFBX212 - F-box domain containing protein, expressed | - |
| 14 | Sobic.003G155700 | transcription initiation factor IID, 18kD subunit family protein, expressed | K03127: transcription initiation factor TFIID subunit 13 |
| 15 | Sobic.004G178550 | - | - |
| 16 | Sobic.002G069300 | DNA binding protein, putative, expressed | - |
| 17 | Sobic.005G228250 | - | - |
| 18 | Sobic.004G296750 | - | - |
| 19 | Sobic.005G133750 | - | - |
| 20 | Sobic.009G019400 | - | - |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
