Gene annotation
Transcriptome id Sobic.001G160600.1
Synonym Sb01g014030
Functional annotation signal recognition particle 54 kDa protein, putative, expressed
UniProt A0A1B6QJ76
Pfam PF02881 PF02978 PF00448
Panther DB PTHR11564 PTHR11564:SF5
NCBI CDD -
KEGG Orthology K03106; SRP54, signal recognition particle subunit SRP54
Gene Ontology GO:0006614; SRP-dependent cotranslational protein targeting to membrane GO:0005525GTP binding GO:00083127S RNA binding


Orthologs (automatic annotation)
TAIR AT1G48900 : Signal recognition particle, SRP54 subunit protein
RAP-DB (Rice) LOC_Os01g56600.1 : signal recognition particle 54 kDa protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G174200 KH domain containing protein, putative, expressed -
2 Sobic.007G075351 - -
3 Sobic.009G024700 MYB family transcription factor, putative, expressed -
4 Sobic.010G049800 strictosidine synthase, putative, expressed -
5 Sobic.007G093300 expressed protein -
6 Sobic.006G064400 desiccation-related protein PCC13-62 precursor, putative, expressed -
7 Sobic.002G021132 - -
8 Sobic.001G368900 IQ calmodulin-binding motif family protein, putative, expressed -
9 Sobic.001G369300 cytochrome P450, putative, expressed -
10 Sobic.009G231500 expressed protein -
11 Sobic.002G008200 flavin-containing monooxygenase family protein, putative, expressed -
12 Sobic.001G381250 - -
13 Sobic.001G381250 - -
14 Sobic.001G381250 - -
15 Sobic.001G381250 - -
16 Sobic.001G381250 - -
17 Sobic.001G381250 - -
18 Sobic.001G381250 - -
19 Sobic.001G381250 - -
20 Sobic.001G381250 - -


Gene co-expression network
sample Sobic001G160600 Sobic001G160600 Sobic006G174200 Sobic006G174200 Sobic001G160600--Sobic006G174200 Sobic007G075351 Sobic007G075351 Sobic001G160600--Sobic007G075351 Sobic009G024700 Sobic009G024700 Sobic001G160600--Sobic009G024700 Sobic010G049800 Sobic010G049800 Sobic001G160600--Sobic010G049800 Sobic007G093300 Sobic007G093300 Sobic001G160600--Sobic007G093300 Sobic006G064400 Sobic006G064400 Sobic001G160600--Sobic006G064400 Sobic002G021132 Sobic002G021132 Sobic001G160600--Sobic002G021132 Sobic001G368900 Sobic001G368900 Sobic001G160600--Sobic001G368900 Sobic001G369300 Sobic001G369300 Sobic001G160600--Sobic001G369300 Sobic006G174200--Sobic001G160600 Sobic003G229800 Sobic003G229800 Sobic006G174200--Sobic003G229800 Sobic006G174200--Sobic007G075351 Sobic009G130200 Sobic009G130200 Sobic006G174200--Sobic009G130200 Sobic001G203700 Sobic001G203700 Sobic006G174200--Sobic001G203700 Sobic002G008200 Sobic002G008200 Sobic006G174200--Sobic002G008200 Sobic005G226000 Sobic005G226000 Sobic006G174200--Sobic005G226000 Sobic006G174200--Sobic001G368900 Sobic006G174200--Sobic002G021132 Sobic007G075351--Sobic006G064400 Sobic001G381250 Sobic001G381250 Sobic007G075351--Sobic001G381250 Sobic009G024700--Sobic001G381250 Sobic010G049800--Sobic006G064400 Sobic010G049800--Sobic001G381250 Sobic007G093300--Sobic010G049800 Sobic007G093300--Sobic001G369300 Sobic007G093300--Sobic007G075351 Sobic007G093300--Sobic001G160600 Sobic007G093300--Sobic006G064400 Sobic006G261200 Sobic006G261200 Sobic007G093300--Sobic006G261200 Sobic008G154801 Sobic008G154801 Sobic007G093300--Sobic008G154801 Sobic007G093300--Sobic009G024700 Sobic009G231500 Sobic009G231500 Sobic007G093300--Sobic009G231500 Sobic010G044600 Sobic010G044600 Sobic006G064400--Sobic010G044600 Sobic010G237100 Sobic010G237100 Sobic006G064400--Sobic010G237100 Sobic005G110000 Sobic005G110000 Sobic006G064400--Sobic005G110000 Sobic002G362400 Sobic002G362400 Sobic006G064400--Sobic002G362400 Sobic005G169300 Sobic005G169300 Sobic006G064400--Sobic005G169300 Sobic005G192901 Sobic005G192901 Sobic006G064400--Sobic005G192901 Sobic005G192801 Sobic005G192801 Sobic006G064400--Sobic005G192801 Sobic005G192900 Sobic005G192900 Sobic006G064400--Sobic005G192900 Sobic005G192700 Sobic005G192700 Sobic006G064400--Sobic005G192700 Sobic006G096200 Sobic006G096200 Sobic002G021132--Sobic006G096200 Sobic002G021132--Sobic009G231500 Sobic009G041100 Sobic009G041100 Sobic002G021132--Sobic009G041100 Sobic001G166500 Sobic001G166500 Sobic002G021132--Sobic001G166500 Sobic009G169650 Sobic009G169650 Sobic002G021132--Sobic009G169650 Sobic002G021132--Sobic007G075351 Sobic007G036600 Sobic007G036600 Sobic002G021132--Sobic007G036600 Sobic007G029800 Sobic007G029800 Sobic002G021132--Sobic007G029800 Sobic006G132300 Sobic006G132300 Sobic002G021132--Sobic006G132300 Sobic009G227000 Sobic009G227000 Sobic001G368900--Sobic009G227000 Sobic001G368900--Sobic006G096200 Sobic001G277800 Sobic001G277800 Sobic001G368900--Sobic001G277800 Sobic010G031600 Sobic010G031600 Sobic001G368900--Sobic010G031600 Sobic004G254400 Sobic004G254400 Sobic001G368900--Sobic004G254400 Sobic005G003750 Sobic005G003750 Sobic001G368900--Sobic005G003750 Sobic003G350900 Sobic003G350900 Sobic001G368900--Sobic003G350900 Sobic007G083300 Sobic007G083300 Sobic001G368900--Sobic007G083300 SobicK043500 SobicK043500 Sobic001G368900--SobicK043500 Sobic001G369300--Sobic010G049800 Sobic001G369300--Sobic006G064400 Sobic001G351300 Sobic001G351300 Sobic001G369300--Sobic001G351300 Sobic004G270350 Sobic004G270350 Sobic001G369300--Sobic004G270350 Sobic001G369300--Sobic001G381250
Octagon: transcription factors


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