Gene annotation
Transcriptome id Sobic.006G174200.1
Synonym
Functional annotation KH domain containing protein, putative, expressed
UniProt A0A1B6PMH5
Pfam PF00013
Panther DB PTHR10288 PTHR10288:SF130
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT5G15270 : RNA-binding KH domain-containing protein
RAP-DB (Rice) LOC_Os10g35220.1 : KH domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a017544 , Zm00025a022758 , Zm00025a006475
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G160600 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
2 Sobic.003G229800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@X8 domain containing protein, expressed -
3 Sobic.007G075351 - -
4 Sobic.009G130200 endo-1,3@1,4-beta-D-glucanase precursor, putative, expressed -
5 Sobic.001G203700 formin-like protein 6 precursor, putative, expressed -
6 Sobic.002G008200 flavin-containing monooxygenase family protein, putative, expressed -
7 Sobic.005G226000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@S-domain receptor-like protein kinase, putative, expressed -
8 Sobic.001G368900 IQ calmodulin-binding motif family protein, putative, expressed -
9 Sobic.002G021132 - -
10 Sobic.005G170100 phosphoesterase family protein, putative, expressed K01114: phospholipase C
11 Sobic.001G443100 Oxidoreductase superfamily protein("PubMedID : 26759170,PubMedID : 24597475")@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
12 Sobic.004G149466 - -
13 Sobic.005G033000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
14 Sobic.010G139400 expressed protein -
15 Sobic.009G024700 MYB family transcription factor, putative, expressed -
16 Sobic.009G115900 PHD finger protein, putative, expressed -
17 Sobic.003G083600 DNA binding protein, putative, expressed -
18 Sobic.007G034600 U box protein 8, putative, expressed -
19 Sobic.002G240800 - -
20 Sobic.006G212400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@QRT3, putative, expressed -


Gene co-expression network
sample Sobic006G174200 Sobic006G174200 Sobic001G160600 Sobic001G160600 Sobic006G174200--Sobic001G160600 Sobic003G229800 Sobic003G229800 Sobic006G174200--Sobic003G229800 Sobic007G075351 Sobic007G075351 Sobic006G174200--Sobic007G075351 Sobic009G130200 Sobic009G130200 Sobic006G174200--Sobic009G130200 Sobic001G203700 Sobic001G203700 Sobic006G174200--Sobic001G203700 Sobic002G008200 Sobic002G008200 Sobic006G174200--Sobic002G008200 Sobic005G226000 Sobic005G226000 Sobic006G174200--Sobic005G226000 Sobic001G368900 Sobic001G368900 Sobic006G174200--Sobic001G368900 Sobic002G021132 Sobic002G021132 Sobic006G174200--Sobic002G021132 Sobic001G160600--Sobic006G174200 Sobic001G160600--Sobic007G075351 Sobic009G024700 Sobic009G024700 Sobic001G160600--Sobic009G024700 Sobic010G049800 Sobic010G049800 Sobic001G160600--Sobic010G049800 Sobic007G093300 Sobic007G093300 Sobic001G160600--Sobic007G093300 Sobic006G064400 Sobic006G064400 Sobic001G160600--Sobic006G064400 Sobic001G160600--Sobic002G021132 Sobic001G160600--Sobic001G368900 Sobic001G369300 Sobic001G369300 Sobic001G160600--Sobic001G369300 Sobic003G229800--Sobic006G174200 Sobic005G170100 Sobic005G170100 Sobic003G229800--Sobic005G170100 Sobic003G083600 Sobic003G083600 Sobic003G229800--Sobic003G083600 Sobic010G234300 Sobic010G234300 Sobic003G229800--Sobic010G234300 Sobic003G229800--Sobic001G203700 Sobic001G471800 Sobic001G471800 Sobic003G229800--Sobic001G471800 Sobic004G085700 Sobic004G085700 Sobic003G229800--Sobic004G085700 Sobic004G232600 Sobic004G232600 Sobic003G229800--Sobic004G232600 Sobic003G086500 Sobic003G086500 Sobic003G229800--Sobic003G086500 Sobic007G075351--Sobic006G064400 Sobic001G381250 Sobic001G381250 Sobic007G075351--Sobic001G381250 Sobic005G033000 Sobic005G033000 Sobic009G130200--Sobic005G033000 Sobic009G079200 Sobic009G079200 Sobic009G130200--Sobic009G079200 Sobic002G096000 Sobic002G096000 Sobic009G130200--Sobic002G096000 Sobic006G133300 Sobic006G133300 Sobic009G130200--Sobic006G133300 Sobic001G238100 Sobic001G238100 Sobic009G130200--Sobic001G238100 Sobic006G059800 Sobic006G059800 Sobic009G130200--Sobic006G059800 Sobic001G443100 Sobic001G443100 Sobic009G130200--Sobic001G443100 Sobic005G226350 Sobic005G226350 Sobic009G130200--Sobic005G226350 Sobic002G334000 Sobic002G334000 Sobic009G130200--Sobic002G334000 Sobic010G118300 Sobic010G118300 Sobic001G203700--Sobic010G118300 Sobic001G203700--Sobic003G229800 Sobic002G238500 Sobic002G238500 Sobic001G203700--Sobic002G238500 Sobic002G081700 Sobic002G081700 Sobic001G203700--Sobic002G081700 Sobic007G129000 Sobic007G129000 Sobic001G203700--Sobic007G129000 Sobic002G091000 Sobic002G091000 Sobic001G203700--Sobic002G091000 Sobic001G203700--Sobic005G226000 Sobic001G203700--Sobic003G086500 Sobic003G419400 Sobic003G419400 Sobic001G203700--Sobic003G419400 Sobic002G008200--Sobic007G075351 Sobic002G008200--Sobic001G368900 Sobic009G227000 Sobic009G227000 Sobic002G008200--Sobic009G227000 Sobic005G112066 Sobic005G112066 Sobic002G008200--Sobic005G112066 Sobic006G031600 Sobic006G031600 Sobic002G008200--Sobic006G031600 Sobic007G156300 Sobic007G156300 Sobic002G008200--Sobic007G156300 Sobic001G326000 Sobic001G326000 Sobic002G008200--Sobic001G326000 Sobic002G077500 Sobic002G077500 Sobic002G008200--Sobic002G077500 Sobic007G049400 Sobic007G049400 Sobic002G008200--Sobic007G049400 Sobic002G247300 Sobic002G247300 Sobic005G226000--Sobic002G247300 Sobic005G003750 Sobic005G003750 Sobic005G226000--Sobic005G003750 Sobic005G226000--Sobic001G368900 Sobic001G484100 Sobic001G484100 Sobic005G226000--Sobic001G484100 Sobic009G025100 Sobic009G025100 Sobic005G226000--Sobic009G025100 Sobic005G226000--Sobic002G008200 Sobic003G430100 Sobic003G430100 Sobic005G226000--Sobic003G430100 Sobic001G518700 Sobic001G518700 Sobic005G226000--Sobic001G518700 Sobic007G091200 Sobic007G091200 Sobic005G226000--Sobic007G091200 Sobic001G368900--Sobic009G227000 Sobic006G096200 Sobic006G096200 Sobic001G368900--Sobic006G096200 Sobic001G277800 Sobic001G277800 Sobic001G368900--Sobic001G277800 Sobic010G031600 Sobic010G031600 Sobic001G368900--Sobic010G031600 Sobic004G254400 Sobic004G254400 Sobic001G368900--Sobic004G254400 Sobic001G368900--Sobic005G003750 Sobic003G350900 Sobic003G350900 Sobic001G368900--Sobic003G350900 Sobic007G083300 Sobic007G083300 Sobic001G368900--Sobic007G083300 SobicK043500 SobicK043500 Sobic001G368900--SobicK043500 Sobic002G021132--Sobic006G096200 Sobic009G231500 Sobic009G231500 Sobic002G021132--Sobic009G231500 Sobic009G041100 Sobic009G041100 Sobic002G021132--Sobic009G041100 Sobic001G166500 Sobic001G166500 Sobic002G021132--Sobic001G166500 Sobic009G169650 Sobic009G169650 Sobic002G021132--Sobic009G169650 Sobic002G021132--Sobic007G075351 Sobic007G036600 Sobic007G036600 Sobic002G021132--Sobic007G036600 Sobic007G029800 Sobic007G029800 Sobic002G021132--Sobic007G029800 Sobic006G132300 Sobic006G132300 Sobic002G021132--Sobic006G132300
Octagon: transcription factors


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