Gene annotation
Transcriptome id Sobic.004G149466.1
Synonym -
Functional annotation -
UniProt A0A1Z5RMZ7
Pfam PF04564
Panther DB PTHR22849 PTHR22849:SF42
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT5G18320 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os02g28870.1 : U-box domain-containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G221700 MBTB7 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
2 Sobic.003G244900 RIPER3 - Ripening-related family protein precursor, putative, expressed -
3 Sobic.005G042300 expressed protein -
4 Sobic.005G125800 - -
5 Sobic.007G062700 zinc finger family protein, putative, expressed -
6 Sobic.002G143700 alpha-soluble NSF attachment protein, putative, expressed -
7 Sobic.010G049800 strictosidine synthase, putative, expressed -
8 Sobic.002G277432 - -
9 Sobic.005G176500 DEFL14 - Defensin and Defensin-like DEFL family, expressed -
10 Sobic.002G021132 - -
11 Sobic.008G120450 - -
12 Sobic.009G040100 myb-like DNA-binding domain, SHAQKYF class family protein, expressed -
13 Sobic.009G073700 zinc finger, C3HC4 type domain containing protein, expressed -
14 Sobic.002G328550 - K14411: RNA-binding protein Musashi
15 Sobic.006G064400 desiccation-related protein PCC13-62 precursor, putative, expressed -
16 Sobic.010G274200 ZOS6-11 - C2H2 zinc finger protein, expressed -
17 Sobic.009G071900 LTPL31 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
18 Sobic.009G041100 expressed protein -
19 Sobic.007G075351 - -
20 Sobic.005G140300 expressed protein -


Gene co-expression network
sample Sobic004G149466 Sobic004G149466 Sobic006G221700 Sobic006G221700 Sobic004G149466--Sobic006G221700 Sobic003G244900 Sobic003G244900 Sobic004G149466--Sobic003G244900 Sobic005G042300 Sobic005G042300 Sobic004G149466--Sobic005G042300 Sobic005G125800 Sobic005G125800 Sobic004G149466--Sobic005G125800 Sobic007G062700 Sobic007G062700 Sobic004G149466--Sobic007G062700 Sobic002G143700 Sobic002G143700 Sobic004G149466--Sobic002G143700 Sobic010G049800 Sobic010G049800 Sobic004G149466--Sobic010G049800 Sobic002G277432 Sobic002G277432 Sobic004G149466--Sobic002G277432 Sobic005G176500 Sobic005G176500 Sobic004G149466--Sobic005G176500 Sobic006G221700--Sobic004G149466 Sobic002G044100 Sobic002G044100 Sobic006G221700--Sobic002G044100 Sobic003G002501 Sobic003G002501 Sobic006G221700--Sobic003G002501 Sobic006G221700--Sobic003G244900 Sobic003G067700 Sobic003G067700 Sobic006G221700--Sobic003G067700 Sobic006G151001 Sobic006G151001 Sobic006G221700--Sobic006G151001 Sobic006G221700--Sobic010G049800 Sobic004G068000 Sobic004G068000 Sobic006G221700--Sobic004G068000 Sobic002G021132 Sobic002G021132 Sobic006G221700--Sobic002G021132 Sobic002G328550 Sobic002G328550 Sobic003G244900--Sobic002G328550 Sobic003G244900--Sobic004G149466 Sobic003G244900--Sobic003G067700 Sobic005G158700 Sobic005G158700 Sobic003G244900--Sobic005G158700 Sobic003G244900--Sobic006G221700 Sobic004G017600 Sobic004G017600 Sobic003G244900--Sobic004G017600 Sobic001G102150 Sobic001G102150 Sobic003G244900--Sobic001G102150 Sobic002G090100 Sobic002G090100 Sobic003G244900--Sobic002G090100 Sobic005G042300--Sobic005G125800 Sobic005G042300--Sobic002G277432 Sobic005G042300--Sobic005G176500 Sobic009G040100 Sobic009G040100 Sobic005G042300--Sobic009G040100 Sobic008G120450 Sobic008G120450 Sobic005G042300--Sobic008G120450 Sobic010G274200 Sobic010G274200 Sobic005G042300--Sobic010G274200 Sobic009G073700 Sobic009G073700 Sobic005G042300--Sobic009G073700 Sobic005G042300--Sobic007G062700 Sobic005G109500 Sobic005G109500 Sobic005G042300--Sobic005G109500 Sobic005G125800--Sobic005G042300 Sobic005G125800--Sobic002G277432 Sobic005G125800--Sobic005G176500 Sobic005G125800--Sobic009G040100 Sobic005G125800--Sobic008G120450 Sobic005G125800--Sobic010G274200 Sobic005G125800--Sobic009G073700 Sobic005G125800--Sobic007G062700 Sobic005G125800--Sobic005G109500 Sobic005G140300 Sobic005G140300 Sobic007G062700--Sobic005G140300 Sobic006G034275 Sobic006G034275 Sobic007G062700--Sobic006G034275 Sobic007G062700--Sobic002G143700 Sobic010G153800 Sobic010G153800 Sobic007G062700--Sobic010G153800 Sobic005G199101 Sobic005G199101 Sobic007G062700--Sobic005G199101 Sobic007G062700--Sobic005G176500 Sobic005G225000 Sobic005G225000 Sobic007G062700--Sobic005G225000 Sobic010G142300 Sobic010G142300 Sobic007G062700--Sobic010G142300 Sobic005G187100 Sobic005G187100 Sobic007G062700--Sobic005G187100 Sobic002G143700--Sobic006G034275 Sobic002G143700--Sobic010G142300 Sobic002G143700--Sobic005G140300 Sobic005G223200 Sobic005G223200 Sobic002G143700--Sobic005G223200 Sobic003G392500 Sobic003G392500 Sobic002G143700--Sobic003G392500 Sobic009G010000 Sobic009G010000 Sobic002G143700--Sobic009G010000 Sobic005G199300 Sobic005G199300 Sobic002G143700--Sobic005G199300 Sobic007G001600 Sobic007G001600 Sobic002G143700--Sobic007G001600 Sobic002G370300 Sobic002G370300 Sobic002G143700--Sobic002G370300 Sobic006G064400 Sobic006G064400 Sobic010G049800--Sobic006G064400 Sobic001G381250 Sobic001G381250 Sobic010G049800--Sobic001G381250 Sobic002G277432--Sobic005G176500 Sobic002G277432--Sobic008G120450 Sobic002G277432--Sobic009G073700 Sobic009G071900 Sobic009G071900 Sobic002G277432--Sobic009G071900 Sobic002G277432--Sobic005G140300 Sobic002G277432--Sobic005G042300 Sobic002G277432--Sobic005G125800 Sobic005G110000 Sobic005G110000 Sobic002G277432--Sobic005G110000 Sobic002G277432--Sobic006G034275 Sobic005G176500--Sobic002G277432 Sobic005G176500--Sobic008G120450 Sobic005G176500--Sobic009G073700 Sobic005G176500--Sobic009G071900 Sobic005G176500--Sobic005G140300 Sobic005G176500--Sobic006G034275 Sobic005G176500--Sobic005G110000 Sobic010G237100 Sobic010G237100 Sobic005G176500--Sobic010G237100 Sobic005G176500--Sobic001G381250
Octagon: transcription factors


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